CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G392100.1	Wheat	nucleus	67.66	79.48
GSMUA_Achr4P17890_001	Banana	nucleus	33.09	79.46
TraesCS2D01G390200.1	Wheat	nucleus	66.91	78.6
Zm00001d002794_P001	Maize	nucleus	81.78	77.46
HORVU2Hr1G093350.3	Barley	nucleus	66.17	77.39
TraesCS2B01G410400.1	Wheat	nucleus	65.43	76.86
KXG31104	Sorghum	nucleus	50.93	57.56
CDX95615	Canola	nucleus, plastid	34.94	49.47
CDX83415	Canola	nucleus, plastid	34.57	49.47
CDY71963	Canola	nucleus	37.17	46.73
Bra004864.1-P	Field mustard	nucleus	37.17	46.51
CDY48258	Canola	nucleus	37.17	46.51
KRH66475	Soybean	nucleus	40.89	46.22
Bra000362.1-P	Field mustard	nucleus	36.06	46.19
KRH48843	Soybean	nucleus	40.52	45.99
AT2G44745.1	Thale cress	nucleus	37.17	45.87
CDY23453	Canola	nucleus	37.17	45.87
CDY30483	Canola	nucleus	37.17	45.45
Solyc01g089960.2.1	Tomato	nucleus	39.78	45.34
KRH40189	Soybean	nucleus	39.78	44.96
PGSC0003DMT400080069	Potato	nucleus	40.15	43.03
OQU86187	Sorghum	mitochondrion, nucleus	33.46	30.51
EES19853	Sorghum	nucleus, plastid	26.77	29.88
EES08501	Sorghum	nucleus	23.79	28.44
EES00970	Sorghum	nucleus	22.3	27.78
EES01425	Sorghum	nucleus	25.28	27.64
EES19157	Sorghum	nucleus	20.82	27.18
EES18577	Sorghum	plastid	21.93	26.94
KXG33244	Sorghum	plastid	21.93	26.22
OQU78504	Sorghum	nucleus	21.19	21.76
KXG34273	Sorghum	mitochondrion	21.93	21.69
EES00157	Sorghum	nucleus	20.82	21.54
EER90854	Sorghum	nucleus	23.42	19.03
EES01107	Sorghum	nucleus	23.42	17.45
EES18690	Sorghum	nucleus	26.02	16.51
EES03393	Sorghum	nucleus	24.16	15.85

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6PMC2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG26824	ProteinID:KXG26824
ProteinID:KXG26824.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF17	SMART:SM00774
EnsemblPlantsGene:SORBI_3006G166300	SUPFAM:SSF118290	UniParc:UPI00081AD349	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:52379151..52383618

Molecular Weight (calculated)

29103.6 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.363

Length

269 amino acids

Sequence
(BLAST)

001: MHACMEGSSQ LLETCLPASS LYALSPHHPL LAPLPNQHKL LQMPLVQEQA AANNHGVMLY SDHHHHGGGL LYPLLLPGIP FCPFSAAADA ATCDKTTTTG
101: GFAALDAGEA GTSVAKAAGE IASTTTTCNG PSSCNWWKGP AAAGEKGGRM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL HPSSLVSAFS
201: KLSLCMRTSR SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHTHSPCS DDADAAAGDH TGSCAFTSL

Best Arabidopsis Sequence Match ( AT2G44745.1 )
(BLAST)

001: MEGGGRRVFS NYDLQQVTSS STTIQENMNF LVPFEETNVL TFFSSSSSSS LSSPSFPIHN SSSTTTTHAP LGFSNNLQGG GPLGSKVVND DQENFGGGTN
101: NDAHSNSWWR SNSGSGDMKN KVKIRRKLRE PRFCFQTKSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR VERLSEDCRM VITTYEGRHN
201: HIPSDDSTSP DHDCLSSF

Arabidopsis Description

WRKY12At2g44745 [Source:UniProtKB/TrEMBL;Acc:Q1PEU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.