CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017444_P001	Maize	extracellular, vacuole	86.97	89.61
Zm00001d051328_P002	Maize	nucleus	84.45	85.53
GSMUA_Achr4P17890_001	Banana	nucleus	37.82	80.36
TraesCS6D01G223900.1	Wheat	cytosol	70.17	70.76
TraesCS6B01G282500.1	Wheat	nucleus	70.17	70.76
HORVU6Hr1G061940.1	Barley	nucleus	66.39	69.6
TraesCS6A01G242000.1	Wheat	nucleus	68.91	69.49
KXG26824	Sorghum	nucleus	57.56	50.93
CDX83415	Canola	nucleus, plastid	39.92	50.53
CDX95615	Canola	nucleus, plastid	39.92	50.0
CDY23453	Canola	nucleus	43.7	47.71
KRH48843	Soybean	nucleus	47.48	47.68
Bra000362.1-P	Field mustard	nucleus	41.6	47.14
KRH66475	Soybean	nucleus	47.06	47.06
CDY71963	Canola	nucleus	42.02	46.73
Bra004864.1-P	Field mustard	nucleus	42.02	46.51
CDY30483	Canola	nucleus	42.86	46.36
AT2G44745.1	Thale cress	nucleus	42.44	46.33
CDY48258	Canola	nucleus	41.6	46.05
KRH40189	Soybean	nucleus	45.38	45.38
Solyc01g089960.2.1	Tomato	nucleus	44.96	45.34
PGSC0003DMT400080069	Potato	nucleus	46.22	43.82
OQU86187	Sorghum	mitochondrion, nucleus	36.55	29.49
EES08501	Sorghum	nucleus	26.47	28.0
EES19853	Sorghum	nucleus, plastid	26.05	25.73
EES01425	Sorghum	nucleus	26.05	25.2
EES00970	Sorghum	nucleus	22.69	25.0
EES19157	Sorghum	nucleus	21.01	24.27
EES18577	Sorghum	plastid	22.27	24.2
KXG33244	Sorghum	plastid	22.27	23.56
OQU78504	Sorghum	nucleus	24.79	22.52
EES00157	Sorghum	nucleus	23.11	21.15
KXG34273	Sorghum	mitochondrion	23.95	20.96
EES01107	Sorghum	nucleus	27.73	18.28
EER90854	Sorghum	nucleus	24.79	17.82
EES03393	Sorghum	nucleus	28.15	16.34
EES18690	Sorghum	nucleus	28.99	16.27

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A194YS88	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG31104	ProteinID:KXG31104
ProteinID:KXG31104.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF17	SMART:SM00774
EnsemblPlantsGene:SORBI_3004G298400	SUPFAM:SSF118290	UniParc:UPI0003C6C75F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:63778460..63782424

Molecular Weight (calculated)

26111.0 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.432

Length

238 amino acids

Sequence
(BLAST)

001: MQAYMEGGQL SACLPGFLVP DHYAFPLPLP LQLPSSQNKL FQMPFVVDQE AETENHGGGG MLSSDHCGLY PLPALPFGSC SGAAGAATAC GGKPTAGFMP
101: SAIVAEEVCT SVTTKLGCND SNGTWWKGSA ATTIAERGKM KVRRKMREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL HPRSYFRCTH SNCRVKKRVE
201: RLSTDCRMVM TTYEGRHTHS PCSDDASSAD HTDCFTSF

Best Arabidopsis Sequence Match ( AT2G44745.1 )
(BLAST)

001: MEGGGRRVFS NYDLQQVTSS STTIQENMNF LVPFEETNVL TFFSSSSSSS LSSPSFPIHN SSSTTTTHAP LGFSNNLQGG GPLGSKVVND DQENFGGGTN
101: NDAHSNSWWR SNSGSGDMKN KVKIRRKLRE PRFCFQTKSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR VERLSEDCRM VITTYEGRHN
201: HIPSDDSTSP DHDCLSSF

Arabidopsis Description

WRKY12At2g44745 [Source:UniProtKB/TrEMBL;Acc:Q1PEU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.