CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46130.1	EES01631	AT2G41090.1	17360592
AT2G46130.1	EES09201	AT2G41090.1	17360592
AT2G46130.1	EES16322	AT2G41090.1	17360592
AT2G46130.1	OQU78227	AT2G41090.1	17360592
AT2G46130.1	EES01631	AT2G41100.1	17360592
AT2G46130.1	EES09201	AT2G41100.1	17360592
AT2G46130.1	EES16322	AT2G41100.1	17360592
AT2G46130.1	OQU78227	AT2G41100.1	17360592
AT2G46130.1	KXG37587	AT4G14640.1	17360592
AT2G46130.1	KXG37588	AT4G14640.1	17360592
AT2G46130.1	EES01631	AT5G21274.1	17360592
AT2G46130.1	EES09201	AT5G21274.1	17360592
AT2G46130.1	EES16322	AT5G21274.1	17360592
AT2G46130.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038761_P002	Maize	nucleus	78.42	86.7
Zm00001d010805_P001	Maize	nucleus	75.1	79.04
TraesCS1D01G351600.1	Wheat	plastid	42.74	76.3
TraesCS1A01G348600.1	Wheat	plastid	42.74	76.3
AT2G46130.1	Thale cress	nucleus	29.88	66.06
GSMUA_Achr7P24780_001	Banana	nucleus	42.32	56.67
TraesCS1B01G363200.1	Wheat	nucleus	51.45	54.15
KRH06569	Soybean	nucleus	40.25	49.74
EES01425	Sorghum	nucleus	50.62	49.59
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	40.66	48.76
AT5G41570.1	Thale cress	nucleus	35.68	48.04
KRH40372	Soybean	cytosol	38.17	47.92
KRH00862	Soybean	cytosol	38.17	47.92
CDY44466	Canola	nucleus	34.85	47.73
CDY39732	Canola	nucleus	34.44	47.16
Bra025490.1-P	Field mustard	nucleus	34.02	47.13
Bra027675.1-P	Field mustard	nucleus	35.27	44.97
CDY25554	Canola	nucleus	34.85	44.68
AT1G64000.1	Thale cress	nucleus	36.1	44.62
Bra027768.1-P	Field mustard	nucleus	34.44	44.38
CDY34393	Canola	nucleus	34.85	44.21
CDY38208	Canola	nucleus	34.02	44.09
CDY55479	Canola	nucleus	33.61	43.55
HORVU1Hr1G081570.1	Barley	plastid	54.36	42.81
PGSC0003DMT400032090	Potato	nucleus	37.34	39.47
Solyc08g081630.1.1	Tomato	nucleus	37.34	38.96
EES08501	Sorghum	nucleus	34.85	37.33
EES19157	Sorghum	nucleus	23.65	27.67
KXG26824	Sorghum	nucleus	29.88	26.77
KXG31104	Sorghum	nucleus	25.73	26.05
EES00970	Sorghum	nucleus	22.41	25.0
KXG33244	Sorghum	plastid	22.82	24.44
EES18577	Sorghum	plastid	21.58	23.74
OQU78504	Sorghum	nucleus	24.48	22.52
KXG34273	Sorghum	mitochondrion	24.48	21.69
OQU86187	Sorghum	mitochondrion, nucleus	24.07	19.66
EES00157	Sorghum	nucleus	21.16	19.62
EER90854	Sorghum	nucleus	25.31	18.43
EES01107	Sorghum	nucleus	25.73	17.17
EES03393	Sorghum	nucleus	29.05	17.07
EES18690	Sorghum	nucleus	27.8	15.8

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8068964	UniProt:C5Z1G4	EnsemblPlants:EES19853	ProteinID:EES19853
ProteinID:EES19853.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF7
SMART:SM00774	EnsemblPlantsGene:SORBI_3009G206800	SUPFAM:SSF118290	UniParc:UPI0001A8915C	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002441423.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:55463596..55464452

Molecular Weight (calculated)

25328.1 Da

IEP (calculated)

9.275

GRAVY (calculated)

-0.400

Length

241 amino acids

Sequence
(BLAST)

001: MENSPLHGVI RQPNTPPLAT GTCLAPLPPA VAAPQPPEQH ACSSDATTTS LVPGAATMMS CPPAAVDWAS LLLPRAPGTL HVGTTPPPVA SEVESGGSSA
101: VTVAGSSASA TAAGEGDNNY KAGKAGKAGG GGRGKKKASR PRFAFQTRSD NDVLDDGYRW RKYGQKAVKN SAFPRSYYRC THHTCDVKKQ VQRLAKDTSI
201: VVTTYEGVHN HPCEKLMEAL SPILKQLQLL SQLQSCTNQL L

Best Arabidopsis Sequence Match ( AT1G64000.1 )
(BLAST)

001: MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL

Arabidopsis Description

WRKY56At1g64000 [Source:UniProtKB/TrEMBL;Acc:Q29PS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.