Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g03650.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41570.1 | VIT_01s0011g03650.t01 | AT1G68450.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G351600.1 | Wheat | plastid | 42.29 | 62.96 |
| TraesCS1A01G348600.1 | Wheat | plastid | 42.29 | 62.96 |
| KRH40372 | Soybean | cytosol | 58.21 | 60.94 |
| KRH00862 | Soybean | cytosol | 58.21 | 60.94 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 47.26 | 52.78 |
| TraesCS3A01G280400.1 | Wheat | nucleus | 53.73 | 48.65 |
| TraesCS3D01G280200.1 | Wheat | nucleus | 53.23 | 48.2 |
| PGSC0003DMT400032090 | Potato | nucleus | 54.23 | 47.81 |
| CDY44466 | Canola | nucleus | 41.79 | 47.73 |
| Bra025490.1-P | Field mustard | nucleus | 41.29 | 47.7 |
| AT5G41570.1 | Thale cress | nucleus | 42.29 | 47.49 |
| CDY39732 | Canola | nucleus | 41.29 | 47.16 |
| Solyc08g081630.1.1 | Tomato | nucleus | 53.73 | 46.75 |
| Zm00001d012789_P001 | Maize | nucleus | 52.74 | 46.7 |
| GSMUA_Achr6P22920_001 | Banana | mitochondrion | 52.24 | 46.26 |
| VIT_17s0000g01280.t01 | Wine grape | nucleus | 34.33 | 45.7 |
| Bra027675.1-P | Field mustard | nucleus | 42.79 | 45.5 |
| CDY34393 | Canola | nucleus | 42.79 | 45.26 |
| CDY25554 | Canola | nucleus | 42.29 | 45.21 |
| AT1G64000.1 | Thale cress | nucleus | 43.78 | 45.13 |
| HORVU3Hr1G069660.1 | Barley | nucleus | 51.24 | 44.59 |
| Bra027768.1-P | Field mustard | nucleus | 41.29 | 44.38 |
| CDY38208 | Canola | nucleus | 40.8 | 44.09 |
| EES01425 | Sorghum | nucleus | 53.73 | 43.9 |
| VIT_04s0069g00980.t01 | Wine grape | nucleus | 21.89 | 43.56 |
| CDY55479 | Canola | nucleus | 40.3 | 43.55 |
| Os01t0734000-01 | Rice | nucleus | 54.23 | 42.91 |
| Zm00001d038761_P002 | Maize | nucleus | 46.27 | 42.66 |
| VIT_01s0010g03930.t01 | Wine grape | nucleus, plastid | 38.31 | 40.74 |
| EES19853 | Sorghum | nucleus, plastid | 48.76 | 40.66 |
| Zm00001d010805_P001 | Maize | nucleus | 46.27 | 40.61 |
| TraesCS1B01G363200.1 | Wheat | nucleus | 45.77 | 40.17 |
| VIT_14s0068g01770.t01 | Wine grape | nucleus | 34.83 | 38.46 |
| VIT_04s0069g00970.t01 | Wine grape | nucleus | 24.38 | 31.41 |
| HORVU1Hr1G081570.1 | Barley | plastid | 46.77 | 30.72 |
| VIT_04s0008g01470.t01 | Wine grape | nucleus | 24.88 | 30.12 |
| VIT_07s0031g01710.t01 | Wine grape | nucleus | 25.37 | 28.33 |
| VIT_07s0031g01840.t01 | Wine grape | nucleus | 26.37 | 23.45 |
| VIT_07s0005g01710.t01 | Wine grape | nucleus | 33.33 | 22.19 |
| VIT_05s0077g00730.t01 | Wine grape | nucleus | 32.84 | 21.36 |
| VIT_01s0011g00720.t01 | Wine grape | nucleus | 31.84 | 20.98 |
| VIT_12s0028g00270.t01 | Wine grape | nucleus | 31.84 | 20.58 |
| VIT_10s0003g02810.t01 | Wine grape | nucleus | 31.84 | 20.06 |
Protein Annotations
| EntrezGene:100267186 | wikigene:100267186 | MapMan:15.5.22 | Gene3D:2.20.25.80 | EMBL:AM425490 | ProteinID:CAN73363 |
| ProteinID:CAN73363.1 | ProteinID:CBI40411 | ProteinID:CBI40411.3 | UniProt:D7UCE6 | EMBL:FN596755 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 |
| EntrezGene:LOC100267186 | wikigene:LOC100267186 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF7 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0001984D1B | ArrayExpress:VIT_15s0046g02150 | EnsemblPlantsGene:VIT_15s0046g02150 | EnsemblPlants:VIT_15s0046g02150.t01 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | RefSeq:XP_002275528 | RefSeq:XP_002275528.2 | RefSeq:XP_002275528.3 | SEG:seg |
Description
No Description!
Coordinates
chr15:+:18940954..18942146
Molecular Weight (calculated)
22619.1 Da
IEP (calculated)
9.582
GRAVY (calculated)
-0.624
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDGDHAPP PPPPPLLPLP SQASSFLFTP SLPSSSMHPH LQLPPPPLPP LQAQILGDID WATLLSAQTG LSDLYPRAEG TSSVMAEEEK GSIKDRRKGV
101: RTTRKATRPR FAFQTRSVDD ILDDGYRWRK YGQKAVKNSI YPRSYYRCTH HTCDVKKQVQ RLSKDTSVVV TTYEGIHNHP CEKLMETLSP LLKQIQFLSR
201: F
101: RTTRKATRPR FAFQTRSVDD ILDDGYRWRK YGQKAVKNSI YPRSYYRCTH HTCDVKKQVQ RLSKDTSVVV TTYEGIHNHP CEKLMETLSP LLKQIQFLSR
201: F
001: MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL
Arabidopsis Description
WRKY24Probable WRKY transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.