Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g01870.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68450.1 | VIT_19s0015g01870.t01 | AT4G26440.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G68450.1 | Thale cress | nucleus | 34.18 | 44.08 |
| Bra033934.1-P | Field mustard | nucleus, plastid | 28.57 | 40.88 |
| CDY44897 | Canola | nucleus, plastid | 28.57 | 40.88 |
| CDY71985 | Canola | nucleus, plastid | 28.57 | 40.88 |
Protein Annotations
| ArrayExpress:VIT_01s0011g03650 | EMBL:AM428301 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g03650.t01 | EnsemblPlantsGene:VIT_01s0011g03650 | InterPro:VQ |
| PANTHER:PTHR33143 | PANTHER:PTHR33143:SF11 | PFAM:PF05678 | ProteinID:CAN73469 | ProteinID:CAN73469.1 | ProteinID:CCB50907 |
| ProteinID:CCB50907.1 | UniParc:UPI00019828EB | UniProt:F6HEW2 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1:+:3318207..3319042
Molecular Weight (calculated)
21396.8 Da
IEP (calculated)
7.194
GRAVY (calculated)
-0.621
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPTKFHDEQ QPRKEINGPR PSPLKINKDS HSINKPSSTL SFSKPPAAKH QQRHPVIIYT HSPKIIHTQA RDFMALVQKL TGLSSSSDSV QNNAPAQPQE
101: AVKASSRDDN ESSSVLTDDH CGGAGDAQVS SSSVSPIFNA SNPYLADIPL FTPNSTDFFC SPCPFYRYPD PAFSSPNMAN SISPSVFEFM KGLPEY
101: AVKASSRDDN ESSSVLTDDH CGGAGDAQVS SSSVSPIFNA SNPYLADIPL FTPNSTDFFC SPCPFYRYPD PAFSSPNMAN SISPSVFEFM KGLPEY
001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
Arabidopsis Description
VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.