Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra019105.1-P | |
| Bra026438.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68450.1 | Bra019105.1-P | AT4G26440.1 | 21798944 |
| AT1G68450.1 | Bra026438.1-P | AT4G26440.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44897 | Canola | nucleus, plastid | 100.0 | 100.0 |
| AT1G68450.1 | Thale cress | nucleus | 54.74 | 49.34 |
| VIT_01s0011g03650.t01 | Wine grape | nucleus | 40.88 | 28.57 |
| Bra037588.1-P | Field mustard | nucleus | 27.74 | 13.24 |
Protein Annotations
Description
AT1G68450 (E=2e-041) | VQ motif-containing protein
Coordinates
chrA02:-:10799321..10799734
Molecular Weight (calculated)
15364.3 Da
IEP (calculated)
10.819
GRAVY (calculated)
-0.592
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPTRCHELS GSRPPSLKLT GESHSIKKTT SFNVFKQSRR HGRAAPVVIY AHSPKVIHTR AENFMALVQR LTGLEGIRRR NPNDVNESSL SVLTTEEASV
101: GTDDTSWERH QQRKNLVDIP LYTPSSMALF GSPTQRL
101: GTDDTSWERH QQRKNLVDIP LYTPSSMALF GSPTQRL
001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
Arabidopsis Description
VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.