Factsheet for Bra037588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18516	Canola	nucleus	94.08	98.54
CDX95531	Canola	nucleus	90.94	93.21
AT3G18360.1	Thale cress	nucleus	62.37	62.81
Solyc03g119410.1.1	Tomato	plastid	17.07	32.45
GSMUA_Achr1P20990_001	Banana	nucleus	24.04	32.39
KRH39177	Soybean	plastid	27.18	32.1
GSMUA_AchrUn_...	Banana	nucleus	20.56	32.07
KRH48492	Soybean	plastid	26.83	31.17
Bra033934.1-P	Field mustard	nucleus, plastid	13.24	27.74
PGSC0003DMT400074049	Potato	plastid	27.87	25.97
GSMUA_Achr11P...	Banana	plastid	24.04	24.73

Protein Annotations

EnsemblPlants:Bra037588.1	EnsemblPlants:Bra037588.1-P	EnsemblPlantsGene:Bra037588	GO:GO:0000003	GO:GO:0008150	GO:GO:0009653
GO:GO:0009856	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0080092	InterPro:VQ	PANTHER:PTHR33143	PANTHER:PTHR33143:SF4	PFAM:PF05678	SEG:seg
UniParc:UPI000254504D	UniProt:M4F925	MapMan:35.1	:	:	:

Description

AT3G18360 (E=5e-041) | VQ motif-containing protein

Coordinates

chrA01:+:22143215..22144078

Molecular Weight (calculated)

30278.8 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.651

Length

287 amino acids

Sequence
(BLAST)

001: MNSTFNDHHH LKREPNDNSG VGIIYPPSPS PLLKLNKDSH VIKKPPSPSS SSSTAAKPRQ PVIIYTNTPK VIHTNPKDFM ALVQKLTGMS HSEEDSGGSS
101: SAVTDRGGKS INRSVSDLTV DRKVNRTRCG GGGGGGGGGG GGHNSYNRTY SGPGGANGKG IFFSNTTICE DSESSSVITT DENMGGGGEH GHVNSSLPYS
201: AVAVSPFPHP PPPPPPPPQS MYDGTNGINY SSYFSTLLPV NPADNFLCGN QNFANFDDPL YFMPNMRSSF SSSSSSGFDG LTEFRDF

Best Arabidopsis Sequence Match ( AT3G18360.1 )
(BLAST)

001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF

Arabidopsis Description

VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.