Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr1P20990_001 | Banana | nucleus | 72.83 | 62.91 |
GSMUA_Achr11P... | Banana | plastid | 79.35 | 52.33 |
KRH41646 | Soybean | nucleus | 29.89 | 39.29 |
Solyc03g119410.1.1 | Tomato | plastid | 28.8 | 35.1 |
PGSC0003DMT400014370 | Potato | nucleus, plastid | 29.89 | 33.95 |
KRH48492 | Soybean | plastid | 43.48 | 32.39 |
KRH39177 | Soybean | plastid | 39.67 | 30.04 |
PGSC0003DMT400074049 | Potato | plastid | 37.5 | 22.4 |
AT3G18360.1 | Thale cress | nucleus | 33.7 | 21.75 |
CDY18516 | Canola | nucleus | 32.07 | 21.53 |
CDX95531 | Canola | nucleus | 32.07 | 21.07 |
Bra037588.1-P | Field mustard | nucleus | 32.07 | 20.56 |
Protein Annotations
EnsemblPlants:GSMUA_AchrUn_randomP16820_001 | EnsemblPlants:GSMUA_AchrUn_randomT16820_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG16820_001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF11 |
PFAM:PF05678 | SEG:seg | UniParc:UPI000294959F | UniProt:M0U9U1 | MapMan:35.2 | : |
Description
Putative Protein MKS1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16820_001]
Coordinates
chrchrUn_random:+:79129485..79130111
Molecular Weight (calculated)
20044.2 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.451
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPVSREING SRPAPLKIHK DSHLIYKSSS SSTITTSSYQ QQRHHPVIIY THSPKVIHTQ ARDFMALVQK LTGLSHSADD DESSSLPPAP PPSNNSSFGG
101: DVHVSCSSLT NAGGISPIAF EQVAPPNPFL SEGPLFTPNS SDFFCSSRSF YRYPDSSLFS PSVPNMDNAI SSSIMDTMKT YQEY
101: DVHVSCSSLT NAGGISPIAF EQVAPPNPFL SEGPLFTPNS SDFFCSSRSF YRYPDSSLFS PSVPNMDNAI SSSIMDTMKT YQEY
001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
Arabidopsis Description
VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.