CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014370	Potato	nucleus, plastid	35.0	30.25
GSMUA_AchrUn_...	Banana	nucleus	39.29	29.89
Solyc03g119410.1.1	Tomato	plastid	32.14	29.8
GSMUA_Achr1P20990_001	Banana	nucleus	38.57	25.35
KRH48492	Soybean	plastid	43.57	24.7
KRH39177	Soybean	plastid	42.14	24.28
KRG90839	Soybean	mitochondrion, nucleus	25.71	22.93
KRH35939	Soybean	nucleus	29.29	21.47
GSMUA_Achr11P...	Banana	plastid	39.29	19.71

Protein Annotations

EMBL:ACUP02004776	EnsemblPlants:KRH41646	EnsemblPlantsGene:GLYMA_08G041900	EntrezGene:106799526	InterPro:VQ	PANTHER:PTHR33143
PANTHER:PTHR33143:SF26	PFAM:PF05678	ProteinID:KRH41646	ProteinID:KRH41646.1	SEG:seg	UniParc:UPI0001BA5DE4
UniProt:K7L4X4	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3319916..3321104

Molecular Weight (calculated)

15590.4 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.724

Length

140 amino acids

Sequence
(BLAST)

001: MGKGQGGLKM NRESHLIRKS SSSSLSKAQQ QRPPVIIYTH PPKVIHTHAR NFMELVQKLT GLYRTDPEDN GGGEEVLKPP TPPRKEEPKA NEAASPEEVE
101: SSCYNCVDYA KNYAVFESDF LCSNNKPLLT FADPSFFFSG

Best Arabidopsis Sequence Match ( AT3G18360.1 )
(BLAST)

001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF

Arabidopsis Description

VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.