CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48492	Soybean	plastid	72.02	70.85
KRH41646	Soybean	nucleus	24.28	42.14
GSMUA_AchrUn_...	Banana	nucleus	30.04	39.67
GSMUA_Achr1P20990_001	Banana	nucleus	32.92	37.56
KRG90839	Soybean	mitochondrion, nucleus	20.99	32.48
KRH35939	Soybean	nucleus	25.1	31.94
AT3G18360.1	Thale cress	nucleus	34.57	29.47
CDY18516	Canola	nucleus	32.1	28.47
GSMUA_Achr11P...	Banana	plastid	31.69	27.6
CDX95531	Canola	nucleus	31.69	27.5
Bra037588.1-P	Field mustard	nucleus	32.1	27.18
PGSC0003DMT400074049	Potato	plastid	33.33	26.3

Protein Annotations

EMBL:ACUP02005921	EnsemblPlants:KRH39177	EnsemblPlantsGene:GLYMA_09G183700	EntrezGene:102666302	InterPro:VQ	PANTHER:PTHR33143
PANTHER:PTHR33143:SF4	PFAM:PF05678	ProteinID:KRH39177	ProteinID:KRH39177.1	SEG:seg	UniParc:UPI0002964F82
UniProt:K7LEQ0	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:40881228..40881959

Molecular Weight (calculated)

26620.0 Da

IEP (calculated)

6.601

GRAVY (calculated)

-0.627

Length

243 amino acids

Sequence
(BLAST)

001: MSPSQFHAKK PITSATTNNN INGLLSSPPL KINKESHFIK KSSSSSSSSS SSTSSSLVNS AMTRAMPTSL YKQPQQHHHP VIIYTHSPKV IHTQPKDFMS
101: LVQKLTGLSR SGEEKEEGGN QSPQQLSNQE FGGDVAAVVG DKESDRKNVN IVKNEDNETS SVITEENNCS SVGENQVNSC FMTGEPSMLE PKLNPYVTNF
201: PVMAPSSAEF VCSSQPFLNY SDSLFFSHNL RTSLEGMKEF LEH

Best Arabidopsis Sequence Match ( AT3G18360.1 )
(BLAST)

001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF

Arabidopsis Description

VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.