Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18516 | Canola | nucleus | 62.81 | 65.33 |
| CDX95531 | Canola | nucleus | 62.46 | 63.57 |
| Bra037588.1-P | Field mustard | nucleus | 62.81 | 62.37 |
| Solyc03g119410.1.1 | Tomato | plastid | 18.6 | 35.1 |
| KRH39177 | Soybean | plastid | 29.47 | 34.57 |
| AT1G68450.1 | Thale cress | nucleus | 18.25 | 34.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.75 | 33.7 |
| KRH48492 | Soybean | plastid | 29.12 | 33.6 |
| GSMUA_Achr1P20990_001 | Banana | nucleus | 24.21 | 32.39 |
| GSMUA_Achr11P... | Banana | plastid | 23.86 | 24.37 |
| PGSC0003DMT400074049 | Potato | plastid | 25.96 | 24.03 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821365 | ProteinID:AEE76086.1 | ArrayExpress:AT3G18360 | EnsemblPlantsGene:AT3G18360 | RefSeq:AT3G18360 |
| TAIR:AT3G18360 | RefSeq:AT3G18360-TAIR-G | EnsemblPlants:AT3G18360.1 | TAIR:AT3G18360.1 | ProteinID:BAB01102.1 | EMBL:BT012192 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 |
| GO:GO:0080092 | RefSeq:NP_188465.1 | PFAM:PF05678 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF4 | UniProt:Q9LS54 |
| UniParc:UPI00000A3BE0 | InterPro:VQ | SEG:seg | : | : | : |
Description
VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
Coordinates
chr3:-:6300620..6301812
Molecular Weight (calculated)
31114.1 Da
IEP (calculated)
7.331
GRAVY (calculated)
-0.764
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.