Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037588.1-P | Field mustard | nucleus | 98.54 | 94.08 |
| CDX95531 | Canola | nucleus | 92.34 | 90.36 |
| AT3G18360.1 | Thale cress | nucleus | 65.33 | 62.81 |
| Solyc03g119410.1.1 | Tomato | plastid | 17.88 | 32.45 |
| GSMUA_Achr1P20990_001 | Banana | nucleus | 25.18 | 32.39 |
| KRH39177 | Soybean | plastid | 28.47 | 32.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.53 | 32.07 |
| KRH48492 | Soybean | plastid | 28.1 | 31.17 |
| CDY44897 | Canola | nucleus, plastid | 13.87 | 27.74 |
| CDY71985 | Canola | nucleus, plastid | 13.87 | 27.74 |
| PGSC0003DMT400074049 | Potato | plastid | 28.1 | 25.0 |
| GSMUA_Achr11P... | Banana | plastid | 25.18 | 24.73 |
Protein Annotations
| EnsemblPlants:CDY18516 | EnsemblPlantsGene:GSBRNA2T00005536001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF4 | PFAM:PF05678 |
| ProteinID:CDY18516 | ProteinID:CDY18516.1 | SEG:seg | UniParc:UPI0004EE4219 | UniProt:A0A078FZT8 | MapMan:35.1 |
Description
BnaA01g26790DBnaA01g26790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZT8]
Coordinates
chrLK032086:-:222998..223861
Molecular Weight (calculated)
28927.4 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.604
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSTFNDHHH LKREPNDNSG VGIIYPPSPS PLLKLNKDSH VIKKPPSPSS SSSTAAKPRQ PVIIYTNTPK VIHTNPKDFM ALVQKLTGMS HSEEDSGGSS
101: SAVTDRGGKS INRSVSDLTV DRKVNRTRCG GGGGGGGGGP GGANGKGIFF SNTTICEDSE SSSVITTDEN MGGGGEHGHV NSSLPYSAVA VSPFPHPPPP
201: PPPPPQSMYD GTNGINYSSY FSTLLPVNPA DNFLCGNQNF ANFDDPLYFM PNMRSSFSSS SSSGFDGLTE FRDF
101: SAVTDRGGKS INRSVSDLTV DRKVNRTRCG GGGGGGGGGP GGANGKGIFF SNTTICEDSE SSSVITTDEN MGGGGEHGHV NSSLPYSAVA VSPFPHPPPP
201: PPPPPQSMYD GTNGINYSSY FSTLLPVNPA DNFLCGNQNF ANFDDPLYFM PNMRSSFSSS SSSGFDGLTE FRDF
001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
Arabidopsis Description
VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.