Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68450.1 | CDX89336 | AT4G26440.1 | 21798944 |
| AT1G68450.1 | CDX94335 | AT4G26440.1 | 21798944 |
| AT1G68450.1 | CDY42736 | AT4G26440.1 | 21798944 |
| AT1G68450.1 | CDY69527 | AT4G26440.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44897 | Canola | nucleus, plastid | 96.35 | 96.35 |
| AT1G68450.1 | Thale cress | nucleus | 55.47 | 50.0 |
| VIT_01s0011g03650.t01 | Wine grape | nucleus | 40.88 | 28.57 |
| CDY18516 | Canola | nucleus | 27.74 | 13.87 |
| CDX95531 | Canola | nucleus | 27.74 | 13.57 |
Protein Annotations
| EnsemblPlants:CDY71985 | EnsemblPlantsGene:GSBRNA2T00022954001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF11 | PFAM:PF05678 |
| ProteinID:CDY71985 | ProteinID:CDY71985.1 | UniParc:UPI0004EE5CD5 | UniProt:A0A078K030 | MapMan:35.1 | : |
Description
BnaAnng39520DBnaAnng39520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K030]
Coordinates
chrLK048414:-:614..1074
Molecular Weight (calculated)
15375.3 Da
IEP (calculated)
10.604
GRAVY (calculated)
-0.584
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPTRCHELS GSRPPSLKLT GESHSIKKTT SFNVVKQSRR HGRAAPVVIY AHSPKVIHTR AENFMALVQR LTGLEEIRRR NPNDVNESSL SVLTTEEVSV
101: GTDDTSWERH QQRKTLADIP LYTPSSMALF GSPTQRL
101: GTDDTSWERH QQRKTLADIP LYTPSSMALF GSPTQRL
001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE
Arabidopsis Description
VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.