CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39177	Soybean	plastid	70.85	72.02
KRH41646	Soybean	nucleus	24.7	43.57
GSMUA_AchrUn_...	Banana	nucleus	32.39	43.48
GSMUA_Achr1P20990_001	Banana	nucleus	33.6	38.97
KRH35939	Soybean	nucleus	26.72	34.55
KRG90839	Soybean	mitochondrion, nucleus	21.86	34.39
GSMUA_Achr11P...	Banana	plastid	34.01	30.11
AT3G18360.1	Thale cress	nucleus	33.6	29.12
PGSC0003DMT400074049	Potato	plastid	35.63	28.57
CDX95531	Canola	nucleus	31.98	28.21
CDY18516	Canola	nucleus	31.17	28.1
Bra037588.1-P	Field mustard	nucleus	31.17	26.83

Protein Annotations

EMBL:ACUP02004242	EnsemblPlants:KRH48492	EnsemblPlantsGene:GLYMA_07G092500	EntrezGene:100789768	InterPro:VQ	PANTHER:PTHR33143
PANTHER:PTHR33143:SF4	PFAM:PF05678	ProteinID:KRH48492	ProteinID:KRH48492.1	SEG:seg	UniParc:UPI000294C7A6
UniProt:K7L0K5	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:8632559..8633302

Molecular Weight (calculated)

27088.5 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.703

Length

247 amino acids

Sequence
(BLAST)

001: MSPSQFHAKK QTTSTTNNNN INGLLSPSLR INKESHLIKK SSSTSPSSSS TSSSSLVNSA MTQAMPMSLY KQTPPQQQQC HPVIIYTHSP KVIHTQPKDF
101: MSLVQKLTGL SRSDEKEDED GGNPTPQQPS NQKFGGDVAV AVGDKESGRK NEDNETSSVI TTEENYCSSV GENQVNSCFM MGEPSMLEPR LNPYVTNLPV
201: LAPSSAEFAC SSQPFLNYTD SLFFSHNMRN SIPSSVTLEG MKEFREH

Best Arabidopsis Sequence Match ( AT3G18360.1 )
(BLAST)

001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF

Arabidopsis Description

VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.