Factsheet for VIT_12s0028g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14487	Soybean	nucleus	61.09	56.72
KRH73639	Soybean	nucleus	59.16	54.6
VIT_10s0003g02810.t01	Wine grape	nucleus	54.34	52.98
VIT_04s0069g00980.t01	Wine grape	nucleus	15.11	46.53
VIT_04s0008g01470.t01	Wine grape	nucleus	21.86	40.96
GSMUA_Achr6P27090_001	Banana	nucleus	39.23	40.67
VIT_17s0000g01280.t01	Wine grape	nucleus	18.97	39.07
GSMUA_Achr9P06750_001	Banana	nucleus	36.33	38.31
GSMUA_AchrUn_...	Banana	nucleus	34.73	37.5
VIT_14s0068g01770.t01	Wine grape	nucleus	20.9	35.71
OQU78504	Sorghum	nucleus	29.58	35.11
VIT_07s0005g01710.t01	Wine grape	nucleus	33.44	34.44
VIT_04s0069g00970.t01	Wine grape	nucleus	17.04	33.97
VIT_07s0031g01710.t01	Wine grape	nucleus	19.61	33.89
VIT_05s0077g00730.t01	Wine grape	nucleus	33.44	33.66
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	20.26	33.33
TraesCS1A01G421800.1	Wheat	nucleus	29.9	32.52
VIT_01s0011g00720.t01	Wine grape	nucleus	31.83	32.46
TraesCS1D01G429800.1	Wheat	nucleus	29.9	32.29
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	20.58	31.84
TraesCS1D01G430000.1	Wheat	nucleus	30.23	31.76
HORVU1Hr1G092130.1	Barley	nucleus	31.19	31.39
TraesCS1D01G429900.1	Wheat	nucleus	30.87	31.27
TraesCS1B01G453300.1	Wheat	nucleus	30.87	30.77
TraesCS1B01G453200.1	Wheat	nucleus	28.3	30.66
Os05t0583000-01	Rice	nucleus	33.12	30.56
VIT_07s0031g01840.t01	Wine grape	nucleus	22.19	30.53
TraesCS1A01G421900.1	Wheat	nucleus	19.61	29.33

Protein Annotations

EntrezGene:100267688	wikigene:100267688	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI22108	ProteinID:CBI22108.3
UniProt:E0CU42	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100267688	wikigene:LOC100267688	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF56	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC54879
UniParc:UPI00019843E1	ArrayExpress:VIT_12s0028g00270	EnsemblPlantsGene:VIT_12s0028g00270	EnsemblPlants:VIT_12s0028g00270.t01	unigene:Vvi.10762	unigene:Vvi.19902
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002283603	RefSeq:XP_002283603.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:878978..881517

Molecular Weight (calculated)

34790.2 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.949

Length

311 amino acids

Sequence
(BLAST)

001: MSDENRSTPY HHDPFCHDQN RVSGAGFPFF CEKPAIFNQG VTPSPQGLHA TDPSYMTFTD YLHGSLDYNT LSKAFDMSCS SSEVISPVDN DSGKGTASHE
101: HPSTPNSLDT SSSTEAITED SGKSKHKPDL QGGGCEDGDE NSKKANKSKK KGEKRPKEPR FAFMTKSEID HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT
201: QKCTVKKRVE RSFQDPSIVI TTYEGQHNHP CPATIRGNAA AMLPTSFFSS ATVGSSFPQE FLTQMLPPNN QSGPNSMYYH NITPHHQQQF QLPDYGLLQD
301: IVPSFIRKQE P

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.