Factsheet for VIT_07s0005g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96545	Soybean	nucleus	53.31	55.52
KRH68280	Soybean	nucleus	52.65	55.4
KRH31775	Soybean	nucleus	57.62	53.87
KRH69197	Soybean	nucleus	56.29	53.12
VIT_05s0077g00730.t01	Wine grape	nucleus	48.01	46.93
VIT_04s0069g00980.t01	Wine grape	nucleus	14.9	44.55
CDY37794	Canola	nucleus	44.7	43.13
VIT_17s0000g01280.t01	Wine grape	nucleus	21.52	43.05
Bra004466.1-P	Field mustard	nucleus	45.36	42.95
CDX80094	Canola	nucleus	44.7	42.72
AT2G47260.1	Thale cress	nucleus	45.36	40.65
Bra021393.1-P	Field mustard	nucleus	43.05	40.25
CDY51420	Canola	nucleus	43.05	40.12
CDY27500	Canola	nucleus	43.05	39.04
PGSC0003DMT400023368	Potato	nucleus	40.07	38.17
VIT_14s0068g01770.t01	Wine grape	nucleus	22.85	37.91
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	23.18	37.04
Solyc01g079260.2.1	Tomato	nucleus	39.07	36.88
VIT_04s0008g01470.t01	Wine grape	nucleus	19.87	36.14
VIT_10s0003g02810.t01	Wine grape	nucleus	37.09	35.11
VIT_01s0011g00720.t01	Wine grape	nucleus	33.77	33.44
VIT_12s0028g00270.t01	Wine grape	nucleus	34.44	33.44
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	22.19	33.33
VIT_04s0069g00970.t01	Wine grape	nucleus	16.23	31.41
VIT_07s0031g01840.t01	Wine grape	nucleus	22.85	30.53
VIT_07s0031g01710.t01	Wine grape	nucleus	17.55	29.44

Protein Annotations

EntrezGene:100264006	wikigene:100264006	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI36970	ProteinID:CBI36970.3
ncoils:Coil	UniProt:D7U2K4	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009624	GO:GO:0009719	GO:GO:0009733	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100264006	wikigene:LOC100264006	PFAM:PF03106
PIRSF:PIRSF038130	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF80	SMART:SM00774	SUPFAM:SSF118290
TIGR:TC63785	TIGR:TC66580	InterPro:TF_WRKY_IIc	UniParc:UPI0001983B65	ArrayExpress:VIT_07s0005g01710	EnsemblPlantsGene:VIT_07s0005g01710
EnsemblPlants:VIT_07s0005g01710.t01	unigene:Vvi.9012	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002277882	RefSeq:XP_002277882.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:4200461..4202183

Molecular Weight (calculated)

33763.4 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.831

Length

302 amino acids

Sequence
(BLAST)

001: MERSGVMKME DPVGSWSFSD HAPDIPAVFD FSDEGEKGTL GFMELLSIQN YGPPLFDLVQ LPSLEKPTGA APAVPASSDV VNPPATPNSS SVSSASSHEQ
101: GSKAVEEEEE DEEEKKTKKE LKPKKTTSQK RQREPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTSASCN VKKRVERCFK DPAIVVTTYE
201: GQHTHPSPIM PRANPSSIAT TFAGPRLQTT PFQHLHLHHH QQQQHPSFND VPLLNYGHGS SFGSAARSVQ ERRSCAPTSA LHRDHGLLQD IVPSHMRKEE
301: EI

Best Arabidopsis Sequence Match ( AT2G47260.1 )
(BLAST)

001: MEFTDFSKTS FYYPSSQSVW DFGDLAAAER HSLGFMELLS SQQHQDFATV SPHSFLLQTS QPQTQTQPSA KLSSSIIQAP PSEQLVTSKV ESLCSDHLLI
101: NPPATPNSSS ISSASSEALN EEKPKTEDNE EEGGEDQQEK SHTKKQLKAK KNNQKRQREA RVAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT
201: TASCNVKKRV ERSFRDPSTV VTTYEGQHTH ISPLTSRPIS TGGFFGSSGA ASSLGNGCFG FPIDGSTLIS PQFQQLVQYH HQQQQQELMS CFGGVNEYLN
301: SHANEYGDDN RVKKSRVLVK DNGLLQDVVP SHMLKEE

Arabidopsis Description

WRKY23Probable WRKY transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:O22900]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.