Factsheet for Bra013289.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78832	Canola	nucleus	99.68	99.68
CDX99495	Canola	nucleus	96.43	95.19
Bra012614.1-P	Field mustard	nucleus	84.42	83.33
Bra040926.1-P	Field mustard	nucleus	77.6	81.29
AT4G18170.1	Thale cress	nucleus	82.14	79.56
Bra017561.1-P	Field mustard	nucleus	56.49	54.21
Bra022033.1-P	Field mustard	nucleus	55.19	53.63
Bra025021.1-P	Field mustard	nucleus	56.17	53.56
VIT_10s0003g02810.t01	Wine grape	nucleus	44.16	42.63
KRH58435	Soybean	nucleus	49.35	42.46
Bra032340.1-P	Field mustard	nucleus	36.36	41.03
KRH42308	Soybean	nucleus	49.03	40.7
Bra040557.1-P	Field mustard	nucleus	18.83	40.28
Bra030178.1-P	Field mustard	nucleus	35.71	39.71
Bra006178.1-P	Field mustard	nucleus	18.51	38.78
Bra008858.1-P	Field mustard	nucleus	18.18	38.1
GSMUA_Achr6P27090_001	Banana	nucleus	35.39	36.33
OQU78504	Sorghum	nucleus	30.52	35.88
Bra020546.1-P	Field mustard	nucleus	18.83	34.52
GSMUA_Achr9P06750_001	Banana	nucleus	31.17	32.54
GSMUA_AchrUn_...	Banana	nucleus	29.87	31.94
Bra009885.1-P	Field mustard	nucleus	18.18	31.82
Bra000362.1-P	Field mustard	nucleus	21.43	31.43
Bra036563.1-P	Field mustard	nucleus	15.91	31.01
Bra004466.1-P	Field mustard	nucleus	31.82	30.72
Bra004864.1-P	Field mustard	nucleus	21.43	30.7
Bra025490.1-P	Field mustard	nucleus	16.88	29.89
Bra037796.1-P	Field mustard	nucleus	16.23	29.76
Bra021393.1-P	Field mustard	nucleus	31.17	29.72
TraesCS1B01G453200.1	Wheat	nucleus	26.95	28.92
TraesCS1D01G430000.1	Wheat	nucleus	27.6	28.72
TraesCS1A01G421800.1	Wheat	nucleus	26.62	28.67
Bra027675.1-P	Field mustard	nucleus	17.53	28.57
Bra027768.1-P	Field mustard	nucleus	17.21	28.34
Bra004370.1-P	Field mustard	nucleus	26.95	28.23
Os05t0583000-01	Rice	nucleus	30.84	28.19
TraesCS1D01G429800.1	Wheat	nucleus	26.3	28.12
Bra004002.1-P	Field mustard	nucleus	26.3	28.03
HORVU1Hr1G092130.1	Barley	nucleus	27.92	27.83
TraesCS1D01G429900.1	Wheat	nucleus	27.6	27.69
TraesCS1B01G453300.1	Wheat	nucleus	27.92	27.56
Bra007674.1-P	Field mustard	nucleus	26.62	27.52
Bra038313.1-P	Field mustard	nucleus	26.62	27.42
TraesCS1A01G421900.1	Wheat	nucleus	18.51	27.4
Bra036138.1-P	Field mustard	nucleus	29.87	26.06
Bra033616.1-P	Field mustard	nucleus	23.38	24.66
Bra011861.1-P	Field mustard	nucleus	23.7	24.5
Bra020628.1-P	Field mustard	nucleus	31.17	24.49
Bra024328.1-P	Field mustard	nucleus	16.23	24.27
Bra010032.1-P	Field mustard	nucleus	30.84	23.81
Bra010683.1-P	Field mustard	nucleus	22.73	23.65
Bra037637.1-P	Field mustard	nucleus	13.64	23.2
Bra031900.1-P	Field mustard	nucleus	14.61	22.84

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra013289	EnsemblPlants:Bra013289.1	EnsemblPlants:Bra013289.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4D9X9	PFAM:PF03106	PIRSF:PIRSF038130	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF56
SMART:SM00774	SUPFAM:SSF118290	InterPro:TF_WRKY_IIc	UniParc:UPI0002545EB8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

AT4G18170 (E=1e-121) WRKY28, ATWRKY28 | WRKY28; transcription factor

Coordinates

chrA01:+:4762891..4764034

Molecular Weight (calculated)

34381.5 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.861

Length

308 amino acids

Sequence
(BLAST)

001: MSNESKGLYS YQYLSSLSLY ELMNLPTSTP SSYGNNGFVP SSYSLADCFQ SSPGAAYDSL LHKTLGVSPS SSEVFNSLVD QESKHDVTND VIGETPTRVS
101: ASSSSSEADH PGEDSGKSQR KRELVGYGGE ENRISKKVGK TKKEEKKQRE PRVSFMTKSE VDHLEDGYRW RKYGQKAVKN SIYPRSYYRC TTQRCNVKKR
201: VERSFQDPTV VITTYEGQHN HPLPTNLRGS SAAAAMYSAD FMTPGSFTHD MFRSSAYTSG GSALDYGYEQ SSYGSVNANP NAHQEYRQGG EYELLKEIFP
301: SIFFKQEP

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.