Factsheet for Bra006178.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P
Bra037588.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13080.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G13080.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G13080.1	Bra037588.1-P	AT3G18360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78504	Canola	nucleus	100.0	100.0
CDX70492	Canola	nucleus	97.96	97.96
AT5G13080.1	Thale cress	nucleus, plastid	87.07	88.28
Bra008858.1-P	Field mustard	nucleus	87.07	87.07
GSMUA_Achr9P07230_001	Banana	mitochondrion	48.98	62.61
Solyc05g015850.2.1	Tomato	nucleus	66.67	56.98
PGSC0003DMT400056352	Potato	nucleus	66.67	56.98
Bra040557.1-P	Field mustard	nucleus	50.34	51.39
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	60.54	47.09
VIT_14s0068g01770.t01	Wine grape	nucleus	57.82	46.7
KRG94564	Soybean	nucleus	59.18	46.28
Bra025490.1-P	Field mustard	nucleus	45.58	38.51
Bra027768.1-P	Field mustard	nucleus	45.58	35.83
Bra027675.1-P	Field mustard	nucleus	45.58	35.45
Bra020546.1-P	Field mustard	nucleus	32.65	28.57
Bra037796.1-P	Field mustard	nucleus	31.29	27.38
Bra009885.1-P	Field mustard	nucleus	32.65	27.27
Bra036563.1-P	Field mustard	nucleus	26.53	24.68
Bra000362.1-P	Field mustard	nucleus	34.01	23.81
Bra004864.1-P	Field mustard	nucleus	34.69	23.72
Bra031900.1-P	Field mustard	nucleus	30.61	22.84
Bra024328.1-P	Field mustard	nucleus	31.97	22.82
Bra004002.1-P	Field mustard	nucleus	39.46	20.07
Bra030178.1-P	Field mustard	nucleus	36.73	19.49
Bra004370.1-P	Field mustard	nucleus	37.41	18.71
Bra032340.1-P	Field mustard	nucleus	34.69	18.68
Bra013289.1-P	Field mustard	nucleus	38.78	18.51
Bra004466.1-P	Field mustard	nucleus	40.14	18.5
Bra038313.1-P	Field mustard	nucleus	37.41	18.39
Bra040926.1-P	Field mustard	nucleus	36.73	18.37
Bra007674.1-P	Field mustard	nucleus	36.73	18.12
Bra021393.1-P	Field mustard	nucleus	39.46	17.96
Bra010683.1-P	Field mustard	nucleus	36.05	17.91
Bra033616.1-P	Field mustard	nucleus	35.37	17.81
Bra012614.1-P	Field mustard	nucleus	37.41	17.63
Bra011861.1-P	Field mustard	nucleus	34.69	17.11
Bra022033.1-P	Field mustard	nucleus	36.05	16.72
Bra036138.1-P	Field mustard	nucleus	39.46	16.43
Bra025021.1-P	Field mustard	nucleus	35.37	16.1
Bra037637.1-P	Field mustard	nucleus	19.73	16.02
Bra017561.1-P	Field mustard	nucleus	34.01	15.58
Bra010032.1-P	Field mustard	nucleus	42.18	15.54
Bra020628.1-P	Field mustard	nucleus	40.82	15.31

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra006178	EnsemblPlants:Bra006178.1	EnsemblPlants:Bra006178.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4CPN9	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0001A647B1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:

Description

AT5G13080 (E=4e-067) WRKY75, ATWRKY75 | WRKY75; transcription factor

Coordinates

chrA03:-:2366855..2367892

Molecular Weight (calculated)

17086.9 Da

IEP (calculated)

9.648

GRAVY (calculated)

-0.990

Length

147 amino acids

Sequence
(BLAST)

001: MEGYQNGSSY APFLSLTSHQ NHSKLEFHQG EEEASKVREG SSRSLEVKKK GKKQRFAFQT RSQVDILDDG YRWRKYGQKA VKNNTFPRSY YRCTYAGCNV
101: KKQVQRLTSD QEVVVTTYEG VHSHAIEKST ENFEHILTQM QIYSSFN

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.