Factsheet for Bra020546.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05537	Canola	nucleus	99.4	99.4
CDY24990	Canola	nucleus	98.21	97.63
Bra009885.1-P	Field mustard	nucleus	82.74	78.98
Bra036563.1-P	Field mustard	nucleus	73.81	78.48
AT5G26170.1	Thale cress	nucleus	80.36	78.03
KRH15622	Soybean	nucleus	27.38	67.65
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	29.76	53.19
KRH61557	Soybean	nucleus	50.6	52.8
KRH52231	Soybean	nucleus	48.21	50.31
KRH05396	Soybean	nucleus	47.02	48.17
VIT_04s0008g01470.t01	Wine grape	nucleus	46.43	46.99
Solyc08g062490.2.1	Tomato	nucleus	41.07	38.12
Bra040557.1-P	Field mustard	nucleus	29.17	34.03
PGSC0003DMT400021144	Potato	nucleus	25.6	33.59
Bra037796.1-P	Field mustard	nucleus	32.74	32.74
Bra006178.1-P	Field mustard	nucleus	28.57	32.65
Bra008858.1-P	Field mustard	nucleus	28.57	32.65
GSMUA_Achr7P09680_001	Banana	nucleus	38.69	32.18
Os01t0186000-01	Rice	cytosol, nucleus	36.31	31.61
Bra024328.1-P	Field mustard	nucleus	38.1	31.07
Zm00001d037607_P001	Maize	nucleus	35.71	30.77
Zm00001d009939_P001	Maize	nucleus	37.5	30.73
Zm00001d011133_P001	Maize	plastid	35.71	30.61
EES19157	Sorghum	nucleus	36.9	30.1
Bra031900.1-P	Field mustard	nucleus	35.12	29.95
TraesCS1D01G122400.1	Wheat	nucleus	33.93	29.38
HORVU1Hr1G027700.1	Barley	nucleus	34.52	29.15
TraesCS3B01G277300.1	Wheat	plastid	34.52	29.0
Os05t0183100-01	Rice	nucleus	36.31	28.77
EES18577	Sorghum	plastid	37.5	28.77
Zm00001d043663_P001	Maize	plastid	35.71	28.44
TraesCS3D01G248500.1	Wheat	mitochondrion	34.52	28.29
TraesCS3A01G248700.1	Wheat	plastid	33.93	28.08
Zm00001d038843_P001	Maize	plastid	36.31	27.6
Os05t0537100-00	Rice	cytosol, plastid	36.31	27.6
Bra025490.1-P	Field mustard	nucleus	28.57	27.59
TraesCS1A01G121500.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	32.14	27.55
HORVU0Hr1G001430.1	Barley	plastid	35.71	27.52
HORVU3Hr1G067510.1	Barley	mitochondrion, plastid	34.52	27.36
TraesCS1B01G374700.1	Wheat	nucleus, plastid	36.31	27.35
TraesCS1A01G358400.1	Wheat	plastid	35.71	27.27
Bra000362.1-P	Field mustard	nucleus	33.93	27.14
KXG33244	Sorghum	plastid	36.31	27.11
TraesCS1D01G362900.1	Wheat	nucleus, plastid	35.12	26.82
TraesCS1B01G374900.1	Wheat	plastid	35.12	26.82
TraesCS1A01G358100.1	Wheat	nucleus, plastid	35.12	26.82
Bra027768.1-P	Field mustard	nucleus	29.76	26.74
TraesCS1D01G363300.1	Wheat	plastid	35.12	26.46
Bra027675.1-P	Field mustard	nucleus	29.76	26.45
TraesCS3A01G111200.1	Wheat	nucleus	34.52	25.78
Bra004864.1-P	Field mustard	nucleus	32.74	25.58
TraesCS3D01G113200.1	Wheat	nucleus	33.93	25.56
TraesCS3B01G129900.1	Wheat	nucleus	32.74	24.77
Os01t0714800-01	Rice	plastid	35.71	24.49
Zm00001d008793_P001	Maize	nucleus	32.74	24.02
HORVU3Hr1G020140.1	Barley	mitochondrion	35.12	23.98
EES00157	Sorghum	nucleus	32.74	21.15
HORVU1Hr1G080300.1	Barley	nucleus	35.12	21.15
Bra032340.1-P	Field mustard	nucleus	33.93	20.88
Zm00001d039531_P001	Maize	nucleus	33.93	20.88
Bra030178.1-P	Field mustard	nucleus	32.74	19.86
Bra040926.1-P	Field mustard	nucleus	33.93	19.39
Bra010683.1-P	Field mustard	nucleus	33.93	19.26
Bra004002.1-P	Field mustard	nucleus	32.74	19.03
Bra013289.1-P	Field mustard	nucleus	34.52	18.83
Bra011861.1-P	Field mustard	nucleus	33.33	18.79
Bra033616.1-P	Field mustard	nucleus	32.14	18.49
Bra038313.1-P	Field mustard	nucleus	32.74	18.39
Bra004370.1-P	Field mustard	nucleus	32.14	18.37
Bra022033.1-P	Field mustard	nucleus	34.52	18.3
Bra037637.1-P	Field mustard	nucleus	19.64	18.23
Bra012614.1-P	Field mustard	nucleus	33.33	17.95
Bra025021.1-P	Field mustard	nucleus	33.93	17.65
Bra004466.1-P	Field mustard	nucleus	33.33	17.55
Bra007674.1-P	Field mustard	nucleus	30.95	17.45
Bra021393.1-P	Field mustard	nucleus	33.33	17.34
Bra017561.1-P	Field mustard	nucleus	32.14	16.82
Bra036138.1-P	Field mustard	nucleus	33.33	15.86
Bra010032.1-P	Field mustard	nucleus	33.93	14.29
Bra020628.1-P	Field mustard	nucleus	33.33	14.29

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra020546	EnsemblPlants:Bra020546.1	EnsemblPlants:Bra020546.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4DVK2	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002546C8F	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

AT5G26170 (E=2e-064) WRKY50, ATWRKY50 | WRKY50; transcription factor

Coordinates

chrA02:-:24662390..24663401

Molecular Weight (calculated)

18851.8 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.832

Length

168 amino acids

Sequence
(BLAST)

001: MNDEETNLAR SFSDDTHSGF GLPDLYLSDE WMDDDLVSAV SGMNHSYGYQ TNVDAVFFSG SSSSFIQPTS PSTKASVAPA SAETQVKKEK KKVKERVAFK
101: TRSDVEVLDD GFKWRKYGKK MVKNSPHPRN YYKCAADACP VKKRVERDKD DPSFVITTYE GSHNHSSM

Best Arabidopsis Sequence Match ( AT5G26170.1 )
(BLAST)

001: MNDADTNLGS SFSDDTHSVF EFPELDLSDE WMDDDLVSAV SGMNQSYGYQ TSDVAGALFS GSSSCFSHPE SPSTKTYVAA TATASADNQN KKEKKKIKGR
101: VAFKTRSEVE VLDDGFKWRK YGKKMVKNSP HPRNYYKCSV DGCPVKKRVE RDRDDPSFVI TTYEGSHNHS SMN

Arabidopsis Description

WRKY50Probable WRKY transcription factor 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.