Factsheet for Solyc08g062490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021144	Potato	nucleus	67.4	95.31
KRH15622	Soybean	nucleus	28.73	76.47
KRH61557	Soybean	nucleus	51.38	57.76
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	28.73	55.32
KRH52231	Soybean	nucleus	46.96	52.8
VIT_04s0008g01470.t01	Wine grape	nucleus	46.41	50.6
KRH05396	Soybean	nucleus	44.2	48.78
Solyc04g051690.2.1	Tomato	nucleus	40.33	41.95
CDY05537	Canola	nucleus	38.67	41.67
Bra020546.1-P	Field mustard	nucleus	38.12	41.07
CDY24990	Canola	nucleus	37.57	40.24
AT5G26170.1	Thale cress	nucleus	37.57	39.31
CDX87064	Canola	nucleus	37.02	39.18
Bra009885.1-P	Field mustard	nucleus	37.57	38.64
CDY52627	Canola	nucleus	37.57	38.64
CDX88219	Canola	nucleus	37.57	38.64
CDY48151	Canola	nucleus	36.46	38.6
Zm00001d037607_P001	Maize	nucleus	38.12	35.38
Solyc02g094270.1.1	Tomato	nucleus	25.41	35.11
Zm00001d043663_P001	Maize	plastid	39.78	34.12
TraesCS1D01G122400.1	Wheat	nucleus	36.46	34.02
HORVU1Hr1G027700.1	Barley	nucleus	37.02	33.67
Zm00001d009939_P001	Maize	nucleus	38.12	33.66
TraesCS1D01G362900.1	Wheat	nucleus, plastid	40.88	33.64
Bra036563.1-P	Field mustard	nucleus	29.28	33.54
Solyc12g056750.1.1	Tomato	nucleus	34.81	33.51
TraesCS3B01G277300.1	Wheat	plastid	37.02	33.5
EES19157	Sorghum	nucleus	38.12	33.5
TraesCS1B01G374900.1	Wheat	plastid	40.33	33.18
TraesCS3D01G248500.1	Wheat	mitochondrion	37.57	33.17
Zm00001d011133_P001	Maize	plastid	35.91	33.16
HORVU3Hr1G067510.1	Barley	mitochondrion, plastid	38.67	33.02
TraesCS1D01G363300.1	Wheat	plastid	40.33	32.74
TraesCS1B01G374700.1	Wheat	nucleus, plastid	40.33	32.74
TraesCS1A01G358400.1	Wheat	plastid	39.78	32.73
TraesCS1A01G358100.1	Wheat	nucleus, plastid	39.78	32.73
GSMUA_Achr7P09680_001	Banana	nucleus	36.46	32.67
TraesCS1A01G121500.1	Wheat	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.36	32.65
Os05t0537100-00	Rice	cytosol, plastid	39.78	32.58
HORVU0Hr1G001430.1	Barley	plastid	39.23	32.57
Os05t0183100-01	Rice	nucleus	38.12	32.55
TraesCS3A01G248700.1	Wheat	plastid	36.46	32.51
EES18577	Sorghum	plastid	39.23	32.42
Zm00001d038843_P001	Maize	plastid	38.67	31.67
KXG33244	Sorghum	plastid	38.67	31.11
Os01t0186000-01	Rice	cytosol, nucleus	31.49	29.53
TraesCS3D01G113200.1	Wheat	nucleus	35.36	28.7
TraesCS3B01G129900.1	Wheat	nucleus	34.81	28.38
Solyc05g015850.2.1	Tomato	nucleus	26.52	27.91
TraesCS3A01G111200.1	Wheat	nucleus	34.25	27.56
Os01t0714800-01	Rice	plastid	37.02	27.35
Zm00001d008793_P001	Maize	nucleus	33.7	26.64
HORVU3Hr1G020140.1	Barley	mitochondrion	35.36	26.02
HORVU1Hr1G080300.1	Barley	nucleus	39.23	25.45
EES00157	Sorghum	nucleus	35.91	25.0
Solyc04g072070.2.1	Tomato	nucleus	30.94	24.56
Zm00001d039531_P001	Maize	nucleus	35.36	23.44
Solyc08g081630.1.1	Tomato	nucleus	29.28	22.94
Solyc04g051540.2.1	Tomato	nucleus	27.62	21.37
Solyc01g089960.2.1	Tomato	nucleus	27.07	20.76
Solyc05g053380.2.1	Tomato	nucleus	29.83	18.31
Solyc12g011200.1.1	Tomato	nucleus	33.15	17.91
Solyc07g056280.2.1	Tomato	nucleus	31.49	17.7
Solyc02g071130.2.1	Tomato	nucleus	29.83	17.03
Solyc01g079260.2.1	Tomato	nucleus	29.28	16.56
Solyc05g012500.2.1	Tomato	nucleus	28.18	15.6
Solyc01g058540.2.1	Tomato	nucleus	27.62	15.43

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009867
GO:GO:0009987	GO:GO:0043565	GO:GO:0050832	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4CL37
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774	SUPFAM:SSF118290
EnsemblPlantsGene:Solyc08g062490.2	EnsemblPlants:Solyc08g062490.2.1	UniParc:UPI000276B0CE	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

Probable WRKY transcription factor 50 [Source:Projected from Arabidopsis thaliana (AT5G26170) UniProtKB/Swiss-Prot;Acc:Q8VWQ5]

Coordinates

chr8:+:51155654..51157374

Molecular Weight (calculated)

20617.6 Da

IEP (calculated)

6.012

GRAVY (calculated)

-0.928

Length

181 amino acids

Sequence
(BLAST)

001: MGGNFSSSSS MDANNSSANM FDGSFTPLLN SPDSDDHFSN NLINFELSDI FEIDNWPVQQ PDPTLVPHYS NYAANQVVNT RSSTTYHEEP SNNVGSSSER
101: REVKDKVAFR TLSQIEILDD GYKWRKYGKK MVKNSPNPRN YYRCSVEGCP VKKRVERDKE DSRYVITTYE GVHNHQGPSL F

Best Arabidopsis Sequence Match ( AT5G26170.1 )
(BLAST)

001: MNDADTNLGS SFSDDTHSVF EFPELDLSDE WMDDDLVSAV SGMNQSYGYQ TSDVAGALFS GSSSCFSHPE SPSTKTYVAA TATASADNQN KKEKKKIKGR
101: VAFKTRSEVE VLDDGFKWRK YGKKMVKNSP HPRNYYKCSV DGCPVKKRVE RDRDDPSFVI TTYEGSHNHS SMN

Arabidopsis Description

WRKY50Probable WRKY transcription factor 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWQ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.