Factsheet for Solyc12g011200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020102	Potato	nucleus	88.66	88.92
Solyc07g056280.2.1	Tomato	nucleus	58.81	61.18
Solyc02g071130.2.1	Tomato	nucleus	40.9	43.22
Solyc02g094270.1.1	Tomato	nucleus	16.72	42.75
Solyc05g015850.2.1	Tomato	nucleus	18.81	36.63
Solyc04g051690.2.1	Tomato	nucleus	18.21	35.06
Solyc08g062490.2.1	Tomato	nucleus	17.91	33.15
Solyc05g053380.2.1	Tomato	nucleus	27.76	31.53
Solyc01g079260.2.1	Tomato	nucleus	28.06	29.38
Solyc01g089960.2.1	Tomato	nucleus	19.4	27.54
Solyc04g051540.2.1	Tomato	nucleus	18.81	26.92
Solyc01g058540.2.1	Tomato	nucleus	25.97	26.85
Solyc05g012500.2.1	Tomato	nucleus	25.37	25.99
Solyc08g081630.1.1	Tomato	nucleus	17.31	25.11
Solyc04g072070.2.1	Tomato	nucleus	16.72	24.56
Solyc12g056750.1.1	Tomato	nucleus	13.73	24.47

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4DCK6	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF56	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc12g011200.1	EnsemblPlants:Solyc12g011200.1.1
UniParc:UPI000276A191	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:4045306..4047487

Molecular Weight (calculated)

37802.4 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.974

Length

335 amino acids

Sequence
(BLAST)

001: MSDNPFYHDY MGIGGGINNT FPFLVENPSN YNNQPITPNI QNQQFVPSSY MTLTECLHGS MDYNTLSNAF GMSCSSSSEV VCPHIDNQDS TEKYNVSTTA
101: EEPVLDSPLG DNQTSVEVPP TPNSSISSTS NEVGEQEDSS KIKKHVQVKG SQEEGEDKSK KECIAKKKGE KKIKEPRFAF MTKSEIDNLE DGYRWRKYGQ
201: KAVKNSPFPR NYYKCTTQKC NVKKRVERSY EDSSIVITTY EGQHNHHCPA TLRGNASFLS SSHFMPNFPP QLFSQMLNIP PNNQNLLITS STYNYNNNNN
301: NYYYQQQQHQ GSEYTLFGGG TNNGDASWVQ KQEPS

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.