Factsheet for PGSC0003DMT400020102

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g011200.1.1	Tomato	nucleus	88.92	88.66
PGSC0003DMT400044721	Potato	nucleus	59.88	62.7
PGSC0003DMT400025113	Potato	nucleus	41.32	43.4
PGSC0003DMT400083306	Potato	nucleus	12.87	42.16
PGSC0003DMT400052057	Potato	nucleus	17.07	40.43
PGSC0003DMT400080128	Potato	extracellular	16.17	39.13
PGSC0003DMT400056352	Potato	nucleus	19.16	37.21
PGSC0003DMT400069966	Potato	nucleus	26.05	34.8
PGSC0003DMT400023368	Potato	nucleus	29.64	31.23
PGSC0003DMT400050745	Potato	nucleus	20.06	28.63
PGSC0003DMT400080069	Potato	nucleus	20.96	27.89
PGSC0003DMT400032090	Potato	nucleus	18.56	27.19
PGSC0003DMT400029812	Potato	nucleus	27.54	27.14
PGSC0003DMT400059673	Potato	nucleus	17.07	26.76
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	26.05	26.69
PGSC0003DMT400079980	Potato	nucleus	17.66	25.54
PGSC0003DMT400021144	Potato	nucleus	9.28	24.22

Protein Annotations

EntrezGene:102590426	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1AD03	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400007788	PGSC:PGSC0003DMG400007788	EnsemblPlants:PGSC0003DMT400020102	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF56
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295E8CA	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006350002.1
SEG:seg	:	:	:	:	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400007788]

Coordinates

chr12:+:1160881..1163790

Molecular Weight (calculated)

37686.5 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.966

Length

334 amino acids

Sequence
(BLAST)

001: MSDNTFYHDY MGIGGGINNT FPFFGENPSN YNDQPIIPNI QNPNHQQFVP SSYMTLTECL HGSMDYNTLS NAFGMSCSSS SEVVRPHIDN QDSTRKSSVS
101: ATIEPVLDLP LGDKTSIEIS PTPNSSISST SNEAGGQEDS SKIKKHVQEK GVQQEGEDKS KKECKEKKKG EKKVKEPRFA FMTKSEIDNL EDGYRWRKYG
201: QKAVKNSPFP RNYYRCTTQK CNVKKRVERS YEDSSIVITT YEGIHNHHCP ATLRGNSSFL SSSHFMPNFP PQLFSQMLNI PPTNQNLLIT SAAYDNNNNN
301: NNYYYQQQHQ GSEYSLFGGG TNNDASWIQK QEPS

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.