Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400023896 | |
| PGSC0003DMT400069203 | |
| PGSC0003DMT400074049 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13080.1 | PGSC0003DMT400023896 | AT1G22920.1 | 21798944 |
| AT5G13080.1 | PGSC0003DMT400069203 | AT1G22920.1 | 21798944 |
| AT5G13080.1 | PGSC0003DMT400074049 | AT3G18360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015850.2.1 | Tomato | nucleus | 97.67 | 97.67 |
| AT5G13080.1 | Thale cress | nucleus, plastid | 59.3 | 70.34 |
| Bra008858.1-P | Field mustard | nucleus | 59.3 | 69.39 |
| CDX69672 | Canola | nucleus | 59.3 | 69.39 |
| CDX97223 | Canola | nucleus | 58.14 | 68.03 |
| GSMUA_Achr9P07230_001 | Banana | mitochondrion | 45.35 | 67.83 |
| CDX70492 | Canola | nucleus | 57.56 | 67.35 |
| Bra006178.1-P | Field mustard | nucleus | 56.98 | 66.67 |
| CDX78504 | Canola | nucleus | 56.98 | 66.67 |
| PGSC0003DMT400052057 | Potato | nucleus | 51.16 | 62.41 |
| VIT_01s0010g03930.t01 | Wine grape | nucleus, plastid | 64.53 | 58.73 |
| VIT_14s0068g01770.t01 | Wine grape | nucleus | 60.47 | 57.14 |
| KRG94564 | Soybean | nucleus | 58.14 | 53.19 |
| PGSC0003DMT400083306 | Potato | nucleus | 23.84 | 40.2 |
| PGSC0003DMT400080128 | Potato | extracellular | 25.58 | 31.88 |
| PGSC0003DMT400032090 | Potato | nucleus | 38.95 | 29.39 |
| PGSC0003DMT400080069 | Potato | nucleus | 35.47 | 24.3 |
| PGSC0003DMT400069966 | Potato | nucleus | 32.56 | 22.4 |
| PGSC0003DMT400021144 | Potato | nucleus | 16.28 | 21.88 |
| PGSC0003DMT400050745 | Potato | nucleus | 29.07 | 21.37 |
| PGSC0003DMT400059673 | Potato | nucleus | 25.0 | 20.19 |
| PGSC0003DMT400023368 | Potato | nucleus | 36.63 | 19.87 |
| PGSC0003DMT400025113 | Potato | nucleus | 36.05 | 19.5 |
| PGSC0003DMT400044721 | Potato | nucleus | 36.05 | 19.44 |
| PGSC0003DMT400020102 | Potato | nucleus | 37.21 | 19.16 |
| PGSC0003DMT400079980 | Potato | nucleus | 25.58 | 19.05 |
| PGSC0003DMT400072958 | Potato | mitochondrion, nucleus | 35.47 | 18.71 |
| PGSC0003DMT400029812 | Potato | nucleus | 33.72 | 17.11 |
Protein Annotations
| EntrezGene:102583094 | MapMan:15.5.22 | Gene3D:2.20.25.80 | ProteinID:AAU50687 | ProteinID:AAU50687.1 | EMBL:AB061245 |
| EMBL:AJ278507 | EMBL:AY615273 | ProteinID:BAC23031 | ProteinID:BAC23031.1 | ProteinID:CAB97004 | ProteinID:CAB97004.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 |
| InterPro:IPR036576 | RefSeq:NP_001275604.1 | PFAM:PF03106 | EnsemblPlantsGene:PGSC0003DMG400021895 | PGSC:PGSC0003DMG400021895 | EnsemblPlants:PGSC0003DMT400056352 |
| PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF25 | UniProt:Q8H9D7 | SMART:SM00774 | SUPFAM:SSF118290 |
| UniParc:UPI00000AD0A5 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
WRKY-type DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021895]
Coordinates
chr5:-:15059048..15061686
Molecular Weight (calculated)
19922.6 Da
IEP (calculated)
9.594
GRAVY (calculated)
-0.836
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MENYATIFPS ASSSSSHHDE YISLMNSKSS ISDDAKEELL FQGKNKAGFL GLMASMETPR DIITKKDEVI KSCKKKIKKP RYAFQTRSQV DILDDGYRWR
101: KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLSKDEEVV VTTYEGMHSH PIDKSTDNFE HILSQMQIYT SF
101: KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLSKDEEVV VTTYEGMHSH PIDKSTDNFE HILSQMQIYT SF
001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF
Arabidopsis Description
WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.