Factsheet for PGSC0003DMT400029812

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g058540.2.1	Tomato	nucleus	77.58	81.17
PGSC0003DMT400069966	Potato	nucleus	34.22	46.4
PGSC0003DMT400052057	Potato	nucleus	16.81	40.43
PGSC0003DMT400083306	Potato	nucleus	11.5	38.24
PGSC0003DMT400080128	Potato	extracellular	14.45	35.51
PGSC0003DMT400056352	Potato	nucleus	17.11	33.72
PGSC0003DMT400044721	Potato	nucleus	29.2	31.03
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	29.5	30.67
PGSC0003DMT400023368	Potato	nucleus	28.61	30.6
PGSC0003DMT400025113	Potato	nucleus	28.32	30.19
PGSC0003DMT400050745	Potato	nucleus	19.47	28.21
PGSC0003DMT400032090	Potato	nucleus	18.88	28.07
PGSC0003DMT400020102	Potato	nucleus	27.14	27.54
PGSC0003DMT400080069	Potato	nucleus	20.06	27.09
PGSC0003DMT400059673	Potato	nucleus	14.75	23.47
PGSC0003DMT400021144	Potato	nucleus	8.55	22.66
PGSC0003DMT400079980	Potato	nucleus	14.16	20.78

Protein Annotations

EntrezGene:102583101	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1ATF4
PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400011457	PGSC:PGSC0003DMG400011457	EnsemblPlants:PGSC0003DMT400029812	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF80	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294DFBD	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_006354313.1	SEG:seg	:	:	:	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011457]

Coordinates

chr1:+:47284761..47286673

Molecular Weight (calculated)

37285.4 Da

IEP (calculated)

4.724

GRAVY (calculated)

-0.691

Length

339 amino acids

Sequence
(BLAST)

001: MDENEKKKLK PTETMSALFP DESSSFFFDM PLCETEKGSS SPMSLIESMF ASHDDPITDS SSLFDLLQPP PSPPPPPPPP PPDVALLIPS PIANTSANSS
101: EISSSSTEVA ANDEHQQMIE TVEQQLENDE DKIDNLQLNP KKRKARKERE PRFAFMTKSE IDHLDDGFRW RKYGQKAVKN SPFPRSYYRC TTATCGVKKR
201: VERSSEDPSI VVTTYEGVHT HPCPVTPRGS IGFFPETTGY SGGSIGGLGV GLGGVASNSS LFFPEFNYQV QPQQSTYFQT PTLPPINSFT TDSSLFSTTN
301: SSQEGMLSPS TSSSLARDHG LLQDMVPSQM RPTDPKQNQ

Best Arabidopsis Sequence Match ( AT5G49520.1 )
(BLAST)

001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK

Arabidopsis Description

WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.