Factsheet for Bra012614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90417	Canola	nucleus	100.0	99.68
CDY09083	Canola	nucleus	99.68	99.36
CDY01523	Canola	nucleus	97.44	97.44
Bra040926.1-P	Field mustard	nucleus	81.73	86.73
AT4G18170.1	Thale cress	nucleus	86.22	84.59
Bra013289.1-P	Field mustard	nucleus	83.33	84.42
Bra017561.1-P	Field mustard	nucleus	58.65	57.01
Bra025021.1-P	Field mustard	nucleus	58.97	56.97
Bra022033.1-P	Field mustard	nucleus	56.73	55.84
VIT_10s0003g02810.t01	Wine grape	nucleus	46.47	45.45
KRH58435	Soybean	nucleus	49.36	43.02
Bra032340.1-P	Field mustard	nucleus	37.5	42.86
Bra030178.1-P	Field mustard	nucleus	37.18	41.88
KRH42308	Soybean	nucleus	49.68	41.78
Bra040557.1-P	Field mustard	nucleus	18.59	40.28
Bra006178.1-P	Field mustard	nucleus	17.63	37.41
Bra008858.1-P	Field mustard	nucleus	17.31	36.73
OQU78504	Sorghum	nucleus	29.49	35.11
GSMUA_Achr6P27090_001	Banana	nucleus	33.65	35.0
GSMUA_AchrUn_...	Banana	nucleus	31.09	33.68
GSMUA_Achr9P06750_001	Banana	nucleus	31.73	33.56
Bra020546.1-P	Field mustard	nucleus	17.95	33.33
Bra000362.1-P	Field mustard	nucleus	21.79	32.38
Bra004864.1-P	Field mustard	nucleus	21.79	31.63
Bra004466.1-P	Field mustard	nucleus	32.05	31.35
Bra009885.1-P	Field mustard	nucleus	17.63	31.25
Bra036563.1-P	Field mustard	nucleus	15.71	31.01
Bra025490.1-P	Field mustard	nucleus	16.99	30.46
TraesCS1A01G421800.1	Wheat	nucleus	27.56	30.07
TraesCS1D01G430000.1	Wheat	nucleus	28.53	30.07
TraesCS1B01G453200.1	Wheat	nucleus	27.56	29.97
Bra021393.1-P	Field mustard	nucleus	30.77	29.72
TraesCS1A01G421900.1	Wheat	nucleus	19.55	29.33
Bra004370.1-P	Field mustard	nucleus	27.56	29.25
TraesCS1D01G429800.1	Wheat	nucleus	26.92	29.17
Os05t0583000-01	Rice	nucleus	31.41	29.08
HORVU1Hr1G092130.1	Barley	nucleus	28.53	28.8
TraesCS1D01G429900.1	Wheat	nucleus	28.21	28.66
Bra037796.1-P	Field mustard	nucleus	15.38	28.57
TraesCS1B01G453300.1	Wheat	nucleus	28.21	28.21
Bra038313.1-P	Field mustard	nucleus	26.92	28.09
Bra027675.1-P	Field mustard	nucleus	16.99	28.04
Bra004002.1-P	Field mustard	nucleus	25.96	28.03
Bra007674.1-P	Field mustard	nucleus	26.6	27.85
Bra027768.1-P	Field mustard	nucleus	16.67	27.81
Bra036138.1-P	Field mustard	nucleus	31.41	27.76
Bra020628.1-P	Field mustard	nucleus	33.01	26.28
Bra024328.1-P	Field mustard	nucleus	17.31	26.21
Bra033616.1-P	Field mustard	nucleus	24.04	25.68
Bra011861.1-P	Field mustard	nucleus	24.36	25.5
Bra010683.1-P	Field mustard	nucleus	24.04	25.34
Bra010032.1-P	Field mustard	nucleus	31.73	24.81
Bra037637.1-P	Field mustard	nucleus	14.1	24.31
Bra031900.1-P	Field mustard	nucleus	15.06	23.86

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra012614	EnsemblPlants:Bra012614.1	EnsemblPlants:Bra012614.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4D804	PFAM:PF03106	PIRSF:PIRSF038130	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF56
SMART:SM00774	SUPFAM:SSF118290	InterPro:TF_WRKY_IIc	UniParc:UPI0002540A1C	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

AT4G18170 (E=3e-138) WRKY28, ATWRKY28 | WRKY28; transcription factor

Coordinates

chrA03:+:23210102..23211224

Molecular Weight (calculated)

34987.9 Da

IEP (calculated)

6.723

GRAVY (calculated)

-1.024

Length

312 amino acids

Sequence
(BLAST)

001: MSNETKDFYN YQFPSSFSLY DMMNLPTSAP SSYGNNGFDL SSYSFTDCLQ SSPGAYDSLL QKNFGLSPSS SEVFNSSIDQ ESKRDVSNDV TGETPTRVSA
101: PSSSSEADHP GEDSGKSQIR KRELAEDGGE ENQNSKKVGK TKKNEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCNVKK
201: RVERSFQDPT VVITTYEGQH NHPIPTNLRG NSAAAAMYSD FMTPRSFTHD MFRTAAYTSG GSVEGALDYG YGQSGYGSVN ANPNSSHQNY HQGGEYELLK
301: EILPSIFFKQ EH

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.