Factsheet for Bra040557.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01970.1	Bra000214.1-P	AT2G41090.1	17360592
AT3G01970.1	Bra018296.1-P	AT3G51920.1	17360592
AT3G01970.1	Bra033467.1-P	AT3G51920.1	17360592
AT3G01970.1	Bra002368.1-P	AT5G21274.1	17360592
AT3G01970.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77096	Canola	nucleus	100.0	100.0
AT3G01970.1	Thale cress	nucleus	81.94	80.27
Bra008858.1-P	Field mustard	nucleus	52.08	51.02
Bra006178.1-P	Field mustard	nucleus	51.39	50.34
Bra025490.1-P	Field mustard	nucleus	39.58	32.76
Bra027768.1-P	Field mustard	nucleus	41.67	32.09
Bra027675.1-P	Field mustard	nucleus	41.67	31.75
Bra020546.1-P	Field mustard	nucleus	34.03	29.17
Bra009885.1-P	Field mustard	nucleus	33.33	27.27
Bra000362.1-P	Field mustard	nucleus	38.19	26.19
Bra004864.1-P	Field mustard	nucleus	38.19	25.58
Bra036563.1-P	Field mustard	nucleus	27.78	25.32
Bra037796.1-P	Field mustard	nucleus	29.17	25.0
Bra024328.1-P	Field mustard	nucleus	30.56	21.36
Bra031900.1-P	Field mustard	nucleus	29.17	21.32
Bra040926.1-P	Field mustard	nucleus	42.36	20.75
Bra030178.1-P	Field mustard	nucleus	39.58	20.58
Bra004466.1-P	Field mustard	nucleus	45.14	20.38
Bra004002.1-P	Field mustard	nucleus	40.28	20.07
Bra032340.1-P	Field mustard	nucleus	37.5	19.78
Bra004370.1-P	Field mustard	nucleus	40.28	19.73
Bra037637.1-P	Field mustard	nucleus	24.31	19.34
Bra038313.1-P	Field mustard	nucleus	39.58	19.06
Bra021393.1-P	Field mustard	nucleus	42.36	18.89
Bra013289.1-P	Field mustard	nucleus	40.28	18.83
Bra007674.1-P	Field mustard	nucleus	38.89	18.79
Bra012614.1-P	Field mustard	nucleus	40.28	18.59
Bra022033.1-P	Field mustard	nucleus	39.58	17.98
Bra010683.1-P	Field mustard	nucleus	36.81	17.91
Bra025021.1-P	Field mustard	nucleus	39.58	17.65
Bra036138.1-P	Field mustard	nucleus	43.06	17.56
Bra033616.1-P	Field mustard	nucleus	35.42	17.47
Bra011861.1-P	Field mustard	nucleus	36.11	17.45
Bra017561.1-P	Field mustard	nucleus	38.89	17.45
Bra020628.1-P	Field mustard	nucleus	44.44	16.33
Bra010032.1-P	Field mustard	nucleus	45.14	16.29

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra040557	EnsemblPlants:Bra040557.1	EnsemblPlants:Bra040557.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006810	GO:GO:0006817	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0044212	InterPro:IPR003657	InterPro:IPR036576	UniProt:M4FHH9
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI0001E247E3	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

AT3G01970 (E=3e-053) WRKY45, ATWRKY45 | WRKY45; transcription factor

Coordinates

chrScaffold000217:-:68236..68758

Molecular Weight (calculated)

16767.6 Da

IEP (calculated)

9.859

GRAVY (calculated)

-1.082

Length

144 amino acids

Sequence
(BLAST)

001: MEDRSCQVLF PSSSVDHRLS GDQTQINTSS SLQQHNTNKE EKHKSKKKER EARFAFQTRS QVDILDDGYR WRKYGQKAVK NNPFPRSYYK CTEKGCRVKK
101: QVQRLSGDEG VVVTTYQGVH THPVDTPSDN FHHILTQMHI FPPF

Best Arabidopsis Sequence Match ( AT3G01970.1 )
(BLAST)

001: MEDRRCDVLF PCSSSVDPRL TEFHGVDNSA QPTTSSEEKP RSKKKKKERE ARYAFQTRSQ VDILDDGYRW RKYGQKAVKN NPFPRSYYKC TEEGCRVKKQ
101: VQRQWGDEGV VVTTYQGVHT HAVDKPSDNF HHILTQMHIF PPFCLKE

Arabidopsis Description

WRKY45Probable WRKY transcription factor 45 [Source:UniProtKB/Swiss-Prot;Acc:Q9S763]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.