CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	81.74	80.29
TraesCS7A01G169600.1	Wheat	cytosol, mitochondrion	58.08	60.81
HORVU0Hr1G019650.1	Barley	mitochondrion	57.19	60.25
TraesCS7D01G170800.1	Wheat	mitochondrion	57.48	60.0
TraesCS7B01G074800.1	Wheat	mitochondrion	56.29	58.39
GSMUA_Achr7P13060_001	Banana	mitochondrion	33.23	45.12
KXG31176	Sorghum	plastid	46.41	43.54
CDX74533	Canola	cytosol	30.54	34.93
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.95	34.48
VIT_18s0001g03270.t01	Wine grape	nucleus	32.34	32.43
PGSC0003DMT400002370	Potato	cytosol	30.84	31.89
CDY01669	Canola	plastid	30.54	31.58
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	30.54	31.38
KRH64713	Soybean	nucleus	32.93	31.25
Solyc11g012950.1.1	Tomato	cytosol	31.14	31.23
AT1G60360.1	Thale cress	nucleus	30.54	31.19
EER92269	Sorghum	nucleus	25.15	29.47
EER95109	Sorghum	plastid	22.46	27.27
EER89027	Sorghum	nucleus	25.45	26.48
KRH44018	Soybean	mitochondrion	24.85	26.18
KRH10441	Soybean	mitochondrion	25.15	26.17
PGSC0003DMT400061055	Potato	extracellular	22.75	25.5
Solyc01g104260.2.1	Tomato	mitochondrion	22.75	25.33
KXG33564	Sorghum	mitochondrion	21.86	24.17
EES17560	Sorghum	plastid	26.35	21.31
VIT_12s0034g01390.t01	Wine grape	mitochondrion	27.84	20.62
EES00577	Sorghum	nucleus	20.96	19.5
EER90075	Sorghum	nucleus	17.37	19.14
KXG39475	Sorghum	cytosol	17.96	18.69
EES14331	Sorghum	plastid	16.17	18.43
OQU85475	Sorghum	cytosol	17.07	17.81
KXG22238	Sorghum	plastid	18.56	15.94
KXG37275	Sorghum	nucleus	17.66	15.4
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	15.27	13.18

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:C5Z6F7	EnsemblPlants:EER89401	ProteinID:EER89401	ProteinID:EER89401.1
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
PANTHER:PTHR44290	PANTHER:PTHR44290:SF4	SMART:SM00184	EnsemblPlantsGene:SORBI_3010G080800	SUPFAM:SSF57850	UniParc:UPI0001A897ED
RefSeq:XP_002438034.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:6901712..6902716

Molecular Weight (calculated)

36242.3 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.471

Length

334 amino acids

Sequence
(BLAST)

001: MSTGAAGGVR RRRRTWRLYW CYVCGRAVRA VSYPTSDVFC PRCFGRFLHE IDLPAPRPVV PPADQFFQPP FLPHDGPRRW VIYTGDASAD PTADDADTPL
101: RRRRRRVPSP PPAPATRRPD EDEDDYDVDA PPPLPPPPVG WDEFFIGANL DALIERLTQD DRPGPAPAPE SAIESLPTVQ VSPANLSDGS QCPVCKEEFE
201: LGEAARELPC KHAYHTDCIV PWLRLHNSCP VCRQELPQQP ADGAQDDGGR EEGSGEMETE TEAPPGPVVM AGWGPLAWLP LSRGPDGDGR VRNEANDGDG
301: DGDADAAGGG SCAPAILQSF VVVAACFVVL SFFV

Best Arabidopsis Sequence Match ( AT1G60360.1 )
(BLAST)

001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.