Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 95.94 | 95.34 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 95.0 | 95.3 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 87.5 | 88.33 |
| EER89401 | Sorghum | mitochondrion, nucleus | 60.0 | 57.48 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 60.31 | 56.76 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 46.88 | 47.17 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 35.0 | 45.53 |
| CDX74533 | Canola | cytosol | 31.88 | 34.93 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 35.62 | 34.23 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 27.19 | 33.33 |
| CDY01669 | Canola | plastid | 32.5 | 32.2 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 31.88 | 31.38 |
| KRH64713 | Soybean | nucleus | 34.06 | 30.97 |
| AT1G60360.1 | Thale cress | nucleus | 31.56 | 30.89 |
| PGSC0003DMT400002370 | Potato | cytosol | 30.31 | 30.03 |
| Solyc11g012950.1.1 | Tomato | cytosol | 31.25 | 30.03 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 25.31 | 28.03 |
| KRH10441 | Soybean | mitochondrion | 27.19 | 27.1 |
| PGSC0003DMT400061055 | Potato | extracellular | 24.38 | 26.17 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 24.38 | 26.0 |
| KRH44018 | Soybean | mitochondrion | 25.62 | 25.87 |
| TraesCS4D01G209500.1 | Wheat | plastid | 21.88 | 25.0 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 24.38 | 23.64 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 25.0 | 23.39 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 26.25 | 22.7 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 25.94 | 20.65 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 29.06 | 20.62 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 24.69 | 20.47 |
| TraesCS7D01G246300.1 | Wheat | plastid | 16.88 | 20.07 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 22.5 | 19.57 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 18.12 | 17.47 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 18.44 | 16.95 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 17.19 | 16.87 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 19.06 | 15.1 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 15.62 | 14.37 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 16.88 | 10.63 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G170800.1 | EnsemblPlantsGene:TraesCS7D01G170800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF4 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | TMHMM:TMhelix | MapMan:35.1 |
Description
No Description!
Coordinates
chr7D:-:123162817..123163779
Molecular Weight (calculated)
34531.6 Da
IEP (calculated)
5.049
GRAVY (calculated)
-0.406
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEPGANGAR RRQRRRWRLY WCYVCRRALR TVSSPTSDVF CPRCLGRFLH EIELPVPREP VHAPTERLFQ PPPLFPYEGA PRHWVIYRGE DDDDAADTPG
101: PRLRRVPSPP PAPGTHGGLG GADAGPPATG IDPAGFFTGP NLNALIDGLT QNDRPGPPPA PASAIDSLPT VHVSPEHMAD GSQCPVCKDE FELGETAREL
201: PCKHAYHSDC IVPWLRLHNS CPVCRQELPM PAGDESPDGA GAGDGGEETV PPWQLLAGWG PLAWLLTLGE PDVGGWDNGS RQRGTEADAD DTGGNVSRGA
301: TILQSFVLVA ACFFFVSFLV
101: PRLRRVPSPP PAPGTHGGLG GADAGPPATG IDPAGFFTGP NLNALIDGLT QNDRPGPPPA PASAIDSLPT VHVSPEHMAD GSQCPVCKDE FELGETAREL
201: PCKHAYHSDC IVPWLRLHNS CPVCRQELPM PAGDESPDGA GAGDGGEETV PPWQLLAGWG PLAWLLTLGE PDVGGWDNGS RQRGTEADAD DTGGNVSRGA
301: TILQSFVLVA ACFFFVSFLV
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.