Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G391700.1 | Wheat | cytosol | 98.47 | 96.98 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 96.93 | 95.76 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 94.17 | 80.16 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 29.75 | 78.23 |
| EER90075 | Sorghum | nucleus | 65.34 | 70.3 |
| Zm00001d046663_P001 | Maize | cytosol | 62.58 | 68.46 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 23.31 | 23.03 |
| TraesCS7D01G246300.1 | Wheat | plastid | 17.48 | 21.19 |
| TraesCS4D01G209500.1 | Wheat | plastid | 17.18 | 20.0 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 22.39 | 19.73 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 17.48 | 19.72 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 16.87 | 17.19 |
| Solyc02g089410.2.1 | Tomato | nucleus | 17.18 | 17.13 |
| CDY34722 | Canola | cytosol | 20.25 | 16.92 |
| KRH56750 | Soybean | cytosol | 17.48 | 16.67 |
| CDY34721 | Canola | cytosol | 19.94 | 16.67 |
| AT5G15820.1 | Thale cress | cytosol | 17.79 | 16.67 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 16.87 | 16.57 |
| CDY69134 | Canola | cytosol | 14.72 | 16.49 |
| CDX90972 | Canola | cytosol | 16.87 | 16.42 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 17.48 | 16.38 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 15.95 | 16.35 |
| CDX85531 | Canola | cytosol | 17.18 | 16.33 |
| CDX78323 | Canola | cytosol | 14.42 | 16.32 |
| KRG93748 | Soybean | nucleus, plastid | 19.02 | 16.32 |
| CDY26465 | Canola | cytosol | 16.87 | 16.22 |
| Bra005970.1-P | Field mustard | cytosol | 14.42 | 16.21 |
| Bra021467.1-P | Field mustard | nucleus | 19.33 | 16.15 |
| KRH03189 | Soybean | nucleus | 17.48 | 16.06 |
| KRH18313 | Soybean | nucleus | 18.4 | 16.04 |
| PGSC0003DMT400003515 | Potato | nucleus | 18.1 | 15.9 |
| AT3G02340.2 | Thale cress | cytosol | 19.94 | 15.89 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 18.71 | 15.8 |
| Bra008671.1-P | Field mustard | nucleus | 13.8 | 15.68 |
| CDX69496 | Canola | cytosol | 13.5 | 15.28 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 18.4 | 15.15 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 17.79 | 14.83 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 18.1 | 14.68 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 16.56 | 14.67 |
| AT5G08139.1 | Thale cress | cytosol | 16.87 | 14.63 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.79 | 14.61 |
| TraesCS4D01G176700.1 | Wheat | cytosol | 15.34 | 14.37 |
| PGSC0003DMT400063293 | Potato | nucleus | 18.71 | 14.12 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 18.71 | 13.9 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 16.87 | 13.85 |
| PGSC0003DMT400068309 | Potato | cytosol | 16.87 | 13.82 |
| CDY21513 | Canola | cytosol | 15.03 | 13.76 |
| CDX69973 | Canola | cytosol | 15.03 | 13.61 |
| Bra009323.1-P | Field mustard | cytosol | 15.03 | 12.93 |
| Solyc03g114680.2.1 | Tomato | nucleus | 19.02 | 12.45 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 15.34 | 12.38 |
| CDY51628 | Canola | peroxisome | 15.34 | 12.32 |
| CDY02194 | Canola | peroxisome | 15.03 | 12.31 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 12.88 | 12.28 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 19.02 | 11.88 |
| Bra013006.1-P | Field mustard | nucleus | 15.03 | 11.75 |
| AT5G60820.1 | Thale cress | cytosol | 15.03 | 11.69 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 18.1 | 11.61 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G387300.1 | EnsemblPlantsGene:TraesCS7D01G387300 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:501099789..501101673
Molecular Weight (calculated)
34650.6 Da
IEP (calculated)
3.722
GRAVY (calculated)
-0.321
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLADEFFL GIDEDGPGSL GEPSYLSFSD AFEEEEHHFT HSDISPDFDI ESQTLTPAPG SPFSFDSDHD LDLDLSLGLG RLSPSFLRMR SPSPARSPPF
101: WDCLEEDLAD DLADGLEWEE IADADDAGDA SVPGGGGGGG AGGGGDADAD VFGFLSEREI LGVMEGIDSG EDESMFSDEP PFDFGDEGPE LDDIFRSVGW
201: EVLPVPLDDD EFEVLPGHMA DVTVGGAPPA ARAAVERLQV VAISGEEAAQ GCAVCKDGIV QGELATRLPC AHFYHGACIG PWLAIRNSCP VCRYELPTDD
301: PDYEQRRARR RSAGGSTAQL GTPMQM
101: WDCLEEDLAD DLADGLEWEE IADADDAGDA SVPGGGGGGG AGGGGDADAD VFGFLSEREI LGVMEGIDSG EDESMFSDEP PFDFGDEGPE LDDIFRSVGW
201: EVLPVPLDDD EFEVLPGHMA DVTVGGAPPA ARAAVERLQV VAISGEEAAQ GCAVCKDGIV QGELATRLPC AHFYHGACIG PWLAIRNSCP VCRYELPTDD
301: PDYEQRRARR RSAGGSTAQL GTPMQM
001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
Arabidopsis Description
At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.