Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G129800.1 | Wheat | cytosol | 88.79 | 95.37 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 94.25 | 93.71 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 90.8 | 91.59 |
| Os03t0324900-01 | Rice | cytosol | 59.2 | 64.38 |
| Zm00001d047560_P001 | Maize | cytosol | 55.46 | 62.46 |
| KXG39475 | Sorghum | cytosol | 56.32 | 61.06 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 32.18 | 37.33 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 19.54 | 36.56 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 30.17 | 35.84 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 30.46 | 35.57 |
| GSMUA_Achr10P... | Banana | nucleus | 29.6 | 33.99 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 35.63 | 33.7 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 30.17 | 31.63 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 31.61 | 27.23 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 22.41 | 26.99 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 24.71 | 26.06 |
| TraesCS4D01G209500.1 | Wheat | plastid | 20.4 | 25.36 |
| TraesCS7D01G246300.1 | Wheat | plastid | 19.25 | 24.91 |
| TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 24.43 | 22.97 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 22.99 | 20.73 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 19.83 | 20.18 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 22.13 | 19.15 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 16.95 | 18.44 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 15.8 | 17.3 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 17.24 | 17.24 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 14.37 | 15.34 |
| TraesCS5D01G146400.1 | Wheat | nucleus | 17.24 | 11.81 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G176700.1 | EnsemblPlantsGene:TraesCS4D01G176700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF2 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4D:-:307236975..307238021
Molecular Weight (calculated)
36742.9 Da
IEP (calculated)
4.494
GRAVY (calculated)
-0.384
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDGDSVPNY LYAVVGRGDR KSQEKDMAEE PGATSRYYCH MCSVIVRPEL GVEEVKCPHC RSGFVEEMAD GRRSSNAVGD RGPATGAGPD DAGARSELAV
101: PQWPPILMDL LGVSYGLDGG DLATLARRQY RHLAFLQLLN ALQEGDADAD GDAPDPGLER LVLVSPADAH AMLVPEGGAS NSAGAGRGAG LTLGELILGP
201: GLDLLLEYLA ETDPSRQGTL PAKMEAVAAL PTVKVSEAAT CPVCLDDFAA GGEAKEMPCK HRFHDVCLLP WLEANSSCPV CRYQLPTDEA TEPAGNGAEE
301: TADESSGNAR RDVEGDSDGG SSGRRRWLAR PFARLFSRRS NGSSSSSR
101: PQWPPILMDL LGVSYGLDGG DLATLARRQY RHLAFLQLLN ALQEGDADAD GDAPDPGLER LVLVSPADAH AMLVPEGGAS NSAGAGRGAG LTLGELILGP
201: GLDLLLEYLA ETDPSRQGTL PAKMEAVAAL PTVKVSEAAT CPVCLDDFAA GGEAKEMPCK HRFHDVCLLP WLEANSSCPV CRYQLPTDEA TEPAGNGAEE
301: TADESSGNAR RDVEGDSDGG SSGRRRWLAR PFARLFSRRS NGSSSSSR
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.