Factsheet for Zm00001d046663_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033980_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Zm00001d033980_P001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90075	Sorghum	nucleus	86.24	84.82
Os06t0633500-01	Rice	cytosol, nucleus	29.53	70.97
TraesCS7A01G391700.1	Wheat	cytosol	69.8	62.84
TraesCS7D01G387300.1	Wheat	cytosol	68.46	62.58
TraesCS7B01G293600.1	Wheat	cytosol	68.79	62.12
HORVU7Hr1G092570.1	Barley	cytosol	67.45	52.48
Zm00001d045625_P001	Maize	cytosol	22.48	21.61
Zm00001d051736_P001	Maize	cytosol	23.49	21.21
Zm00001d031273_P001	Maize	cytosol, plastid	20.47	21.11
Zm00001d032646_P001	Maize	cytosol	25.5	20.27
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	26.17	20.26
Zm00001d028590_P001	Maize	plastid	18.79	20.14
Zm00001d047824_P001	Maize	plastid	18.46	19.78
Zm00001d047476_P001	Maize	mitochondrion	17.79	18.15
CDY69134	Canola	cytosol	17.45	17.87
CDX78323	Canola	cytosol	16.78	17.36
Zm00001d035677_P001	Maize	plastid	20.13	17.24
Bra005970.1-P	Field mustard	cytosol	16.78	17.24
Zm00001d010635_P001	Maize	nucleus	17.79	16.99
Zm00001d053704_P001	Maize	cytosol	20.13	16.85
Zm00001d047560_P001	Maize	cytosol	17.45	16.83
CDY34722	Canola	cytosol	21.81	16.67
KRH56750	Soybean	cytosol	19.13	16.67
Solyc02g089410.2.1	Tomato	nucleus	18.12	16.51
GSMUA_Achr8P24510_001	Banana	cytosol	21.81	16.41
CDY34721	Canola	cytosol	21.48	16.41
CDX85531	Canola	cytosol	18.79	16.33
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.46	16.18
VIT_14s0083g00710.t01	Wine grape	nucleus	21.14	16.11
AT5G15820.1	Thale cress	cytosol	18.79	16.09
Zm00001d038528_P001	Maize	cytosol	17.79	15.92
Bra021467.1-P	Field mustard	nucleus	20.81	15.9
CDX90972	Canola	cytosol	17.79	15.82
KRH03189	Soybean	nucleus	18.79	15.77
Zm00001d011076_P001	Maize	plastid	20.47	15.76
PGSC0003DMT400003515	Potato	nucleus	19.46	15.63
Zm00001d043183_P001	Maize	plastid	16.78	15.38
AT5G08139.1	Thale cress	cytosol	19.13	15.16
KRG93748	Soybean	nucleus, plastid	19.13	15.0
Bra008671.1-P	Field mustard	nucleus	14.43	14.98
KRH18313	Soybean	nucleus	18.79	14.97
AT3G02340.2	Thale cress	cytosol	20.47	14.91
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	19.8	14.86
PGSC0003DMT400068309	Potato	cytosol	19.8	14.82
VIT_17s0000g04730.t01	Wine grape	nucleus	21.81	14.81
Zm00001d052154_P001	Maize	mitochondrion	15.77	14.78
CDY26465	Canola	cytosol	16.78	14.75
Zm00001d012564_P001	Maize	mitochondrion	17.11	14.74
PGSC0003DMT400063293	Potato	nucleus	21.14	14.58
CDX69496	Canola	cytosol	14.09	14.58
CDY51628	Canola	peroxisome	19.8	14.53
CDY02194	Canola	peroxisome	19.13	14.32
CDX69973	Canola	cytosol	17.11	14.17
Zm00001d040445_P001	Maize	nucleus	16.44	14.16
Zm00001d018190_P001	Maize	mitochondrion	15.77	14.11
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	18.79	14.11
Bra013006.1-P	Field mustard	nucleus	19.46	13.91
CDY21513	Canola	cytosol	16.44	13.76
Zm00001d008237_P001	Maize	nucleus	16.11	13.75
Zm00001d013005_P002	Maize	nucleus	17.11	13.75
Bra009323.1-P	Field mustard	cytosol	17.11	13.46
AT5G60820.1	Thale cress	cytosol	18.46	13.13
Solyc03g114680.2.1	Tomato	nucleus	21.81	13.05
GSMUA_Achr3P06300_001	Banana	cytosol	21.48	12.26

Protein Annotations

EMBL:BT039305	EnsemblPlants:Zm00001d046663_P001	EnsemblPlants:Zm00001d046663_T001	EnsemblPlantsGene:Zm00001d046663	EntrezGene:100284102	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PFAM:PF13639
PFscan:PS50089	ProteinID:AQL04820.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00017B7D7D
UniProt:B4FQB7	MapMan:35.1	:	:	:	:

Description

RING/U-box superfamily protein

Coordinates

chr9:+:101158745..101159641

Molecular Weight (calculated)

31597.4 Da

IEP (calculated)

3.694

GRAVY (calculated)

-0.161

Length

298 amino acids

Sequence
(BLAST)

001: MADFGDELFL DVGDDGFGDL SYVSFSESIE LDLACPRDVF SAGFDPETLT HIPGSPISFD SDPDLRHLSP SLTCSPPFWG CLDDAASFEW EEIADAALGV
101: GGGAGGAGGG GQGLEGDADA DADVFGFLDE REMLGVMEGI DSGDDDSIFS DEPPFDFGDG DTELEGIFRS GVGWELLPVP LDEDEFEVLP GHVVEVGGAP
201: PAALAVVERL QVVAVRGEEV VQECAVCKEG MEQGELTTGL PCGHFYHGAC IGPWLAIRNT CPVCRYELPT DDPEYEKRRT RRHSAGGSTP QLGAPMQV

Best Arabidopsis Sequence Match ( AT5G08139.1 )
(BLAST)

001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.