Factsheet for Zm00001d012564_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043183_P001	Maize	plastid	81.79	87.08
KXG33564	Sorghum	mitochondrion	73.41	84.11
Os01t0802000-01	Rice	nucleus	58.09	61.09
TraesCS3D01G324300.1	Wheat	mitochondrion	59.25	59.94
TraesCS3B01G361000.1	Wheat	cytosol	58.38	58.89
TraesCS3A01G330900.1	Wheat	mitochondrion	58.67	50.37
Zm00001d047476_P001	Maize	mitochondrion	35.55	42.12
Zm00001d045625_P001	Maize	cytosol	22.25	24.84
Zm00001d047824_P001	Maize	plastid	19.94	24.82
Zm00001d028590_P001	Maize	plastid	19.94	24.82
Zm00001d052154_P001	Maize	mitochondrion	21.68	23.58
Zm00001d047560_P001	Maize	cytosol	20.81	23.3
Zm00001d018190_P001	Maize	mitochondrion	22.25	23.12
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	21.97	22.35
Zm00001d032646_P001	Maize	cytosol	23.7	21.87
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	23.99	21.56
Zm00001d008237_P001	Maize	nucleus	21.68	21.49
Zm00001d040445_P001	Maize	nucleus	21.39	21.39
Zm00001d035677_P001	Maize	plastid	21.1	20.98
Zm00001d010635_P001	Maize	nucleus	18.5	20.51
Zm00001d038528_P001	Maize	cytosol	19.08	19.82
Zm00001d011076_P001	Maize	plastid	21.97	19.64
Zm00001d013005_P002	Maize	nucleus	18.79	17.52
Zm00001d046663_P001	Maize	cytosol	14.74	17.11
Zm00001d051736_P001	Maize	cytosol	15.32	16.06
Zm00001d031273_P001	Maize	cytosol, plastid	13.01	15.57
Zm00001d053704_P001	Maize	cytosol	13.87	13.48

Protein Annotations

EntrezGene:100282497	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK99879.1	UniProt:B4FJL7	EMBL:BT037305
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00017B7155	EnsemblPlantsGene:Zm00001d012564	EnsemblPlants:Zm00001d012564_P001	EnsemblPlants:Zm00001d012564_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Probable E3 ubiquitin-protein ligase RHC1A

Coordinates

chr8:-:176755046..176762074

Molecular Weight (calculated)

38330.7 Da

IEP (calculated)

5.378

GRAVY (calculated)

-0.503

Length

346 amino acids

Sequence
(BLAST)

001: MSNRATHWCY ACQRPIRLRG QDIICPNCSD GFIQEISEMG GVLNTYGLTE PDFEERQARR FGMMDAISSL MRQRLSEIGR DSLFDIHGRQ GTGTEYGRRS
101: TAIPTLVFGG IPSPAVGSSD INVVIREGRR AGAARPNFSS LVVGPSLEAL FEQLLLQNNR QGPPPAPQSA IDSMPVVKIN RRHLDEDPQC AVCKDKFEVG
201: AEAREMPCKH LYHTDCIIPW LVQHNSCPVC RHPLPSQRSG SSTSSARVPS AYYNETACPP AVARADFDPV PSAYYNETAT DPPAVTRADF DPAPGNYGSE
301: SQESHVPFSF LWPFGPSSSY QYEENVDEPA VYDPNQIAYS AWHYDH

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.