Factsheet for Zm00001d047824_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028590_P001	Maize	plastid	99.28	99.28
EER95109	Sorghum	plastid	97.84	98.91
Os03t0271600-01	Rice	plastid	92.81	92.47
TraesCS4D01G209500.1	Wheat	plastid	92.45	91.79
TraesCS4B01G209100.1	Wheat	plastid	92.45	91.79
TraesCS4A01G095800.1	Wheat	cytosol	92.09	91.43
HORVU4Hr1G060130.1	Barley	cytosol	91.73	72.44
GSMUA_Achr7P15040_001	Banana	mitochondrion	55.4	48.73
KRH23103	Soybean	nucleus	53.24	47.13
KRH10229	Soybean	nucleus	52.88	46.82
Zm00001d035677_P001	Maize	plastid	56.83	45.4
GSMUA_Achr10P...	Banana	mitochondrion	54.68	45.1
CDY20473	Canola	nucleus, plastid	53.24	44.31
Bra005020.1-P	Field mustard	nucleus, plastid	53.24	43.4
KRH29763	Soybean	nucleus	55.76	42.94
CDX74839	Canola	cytosol, plastid	50.0	42.9
KRG97885	Soybean	mitochondrion	54.32	42.3
GSMUA_Achr5P07070_001	Banana	nucleus	50.0	42.25
Zm00001d011076_P001	Maize	plastid	58.27	41.86
KRH24759	Soybean	nucleus	54.32	41.83
KRH30994	Soybean	nucleus	58.63	41.48
CDY53450	Canola	cytosol	47.84	41.3
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	57.19	41.19
Bra000143.1-P	Field mustard	nucleus	55.4	41.07
CDY07641	Canola	nucleus	55.04	40.91
CDY24951	Canola	nucleus	54.68	40.53
GSMUA_Achr2P19140_001	Banana	mitochondrion	52.52	40.33
CDY61251	Canola	cytosol	51.44	39.61
Solyc06g005650.2.1	Tomato	extracellular	28.42	39.5
CDX80258	Canola	plastid	50.36	39.44
PGSC0003DMT400005512	Potato	mitochondrion	54.68	39.38
GSMUA_Achr10P...	Banana	mitochondrion	56.12	38.81
PGSC0003DMT400016233	Potato	nucleus	54.68	38.58
Solyc04g011610.1.1	Tomato	nucleus	54.68	38.48
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	51.44	38.34
Bra020313.1-P	Field mustard	plastid	52.52	37.53
CDY48679	Canola	cytosol, plastid	44.6	37.13
CDX99105	Canola	cytosol, plastid	43.17	37.04
Bra006709.1-P	Field mustard	plastid	52.16	36.9
CDX88709	Canola	cytosol, plastid	52.16	36.8
Bra002559.1-P	Field mustard	plastid	52.52	36.78
AT2G39720.2	Thale cress	nucleus	52.88	36.66
AT3G46620.1	Thale cress	cytosol, plastid	51.8	36.46
CDY33046	Canola	plastid	44.24	35.96
KRH15082	Soybean	nucleus	47.84	34.82
KRH73053	Soybean	nucleus	47.48	33.76
AT5G59550.2	Thale cress	nucleus, plastid	52.88	28.71
Zm00001d047476_P001	Maize	mitochondrion	26.26	25.0
Zm00001d045625_P001	Maize	cytosol	27.34	24.52
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	27.7	22.65
Zm00001d043183_P001	Maize	plastid	25.9	22.15
Zm00001d052154_P001	Maize	mitochondrion	24.46	21.38
Zm00001d032646_P001	Maize	cytosol	28.78	21.33
Zm00001d047560_P001	Maize	cytosol	23.38	21.04
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	28.42	20.52
Zm00001d018190_P001	Maize	mitochondrion	24.1	20.12
Zm00001d012564_P001	Maize	mitochondrion	24.82	19.94
Zm00001d031273_P001	Maize	cytosol, plastid	20.14	19.38
Zm00001d040445_P001	Maize	nucleus	23.74	19.08
Zm00001d010635_P001	Maize	nucleus	21.22	18.91
Zm00001d008237_P001	Maize	nucleus	23.38	18.62
Zm00001d051736_P001	Maize	cytosol	21.94	18.48
Zm00001d046663_P001	Maize	cytosol	19.78	18.46
Zm00001d038528_P001	Maize	cytosol	21.94	18.32
Zm00001d013005_P002	Maize	nucleus	23.38	17.52
Zm00001d053704_P001	Maize	cytosol	19.42	15.17

Protein Annotations

EnsemblPlants:Zm00001d047824_P001	EnsemblPlants:Zm00001d047824_T001	EnsemblPlantsGene:Zm00001d047824	EntrezGene:103639315	Gene3D:3.30.40.10	InterPro:DUF1117
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF1
PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:AQL07706.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000221DC9F	UniProt:K7W0S6	MapMan:35.1	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr9:-:142612911..142613747

Molecular Weight (calculated)

29493.9 Da

IEP (calculated)

7.339

GRAVY (calculated)

-0.287

Length

278 amino acids

Sequence
(BLAST)

001: MDSSPVSYWC YSCSRFVRVS PSTVVCPECD GGFLEQFTQP PPRGGGGSGR RGTMNPVIVL RGGSLSGFEL YYDDGAGEGL RPLPGDVQHL LMGSGFHRLL
101: DQFSRLEAAA PRPPASKAAV ESMPSVTVAG GGAHCAVCQE AFEPGAAGRE MPCKHVYHQD CILPWLSLRN SCPVCRQELP AAATPDAEAD AGLTIWRLPR
201: GGFAVGRFAG GPREQLPVVY TELDGGFSNG VGPRRVTWPE GDGQVDGGEG RIRRLLRNLF GCFGHGSRPA SSSQSRSG

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.