Factsheet for Zm00001d011076_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035677_P001	Maize	plastid	72.09	80.17
EES17560	Sorghum	plastid	81.65	76.51
Os05t0110000-01	Rice	mitochondrion	59.69	69.37
TraesCS1B01G036900.1	Wheat	cytosol	66.93	64.91
TraesCS1A01G029800.1	Wheat	cytosol	66.67	64.66
HORVU1Hr1G004330.14	Barley	cytosol	66.93	64.59
TraesCS1D01G030300.1	Wheat	nucleus	66.93	64.43
Zm00001d028590_P001	Maize	plastid	42.12	58.63
Zm00001d047824_P001	Maize	plastid	41.86	58.27
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.32	53.28
Os01t0972000-01	Rice	nucleus	44.7	51.8
KRH23103	Soybean	nucleus	41.34	50.96
KRH10229	Soybean	nucleus	41.34	50.96
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	45.22	50.87
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	49.61	49.74
KRH24759	Soybean	nucleus	45.99	49.31
KRH29763	Soybean	nucleus	45.74	49.03
Solyc06g005650.2.1	Tomato	extracellular	25.06	48.5
KRG97885	Soybean	mitochondrion	44.44	48.18
PGSC0003DMT400005512	Potato	mitochondrion	47.55	47.67
KRH30994	Soybean	nucleus	46.77	46.06
PGSC0003DMT400016233	Potato	nucleus	46.77	45.94
Solyc04g011610.1.1	Tomato	nucleus	46.77	45.82
CDY20473	Canola	nucleus, plastid	39.53	45.81
Bra005020.1-P	Field mustard	nucleus, plastid	39.28	44.57
CDX74839	Canola	cytosol, plastid	37.21	44.44
CDY53450	Canola	cytosol	36.18	43.48
CDX80258	Canola	plastid	39.02	42.54
Bra020313.1-P	Field mustard	plastid	41.86	41.65
Bra000143.1-P	Field mustard	nucleus	40.31	41.6
Bra006709.1-P	Field mustard	plastid	42.12	41.48
CDY07641	Canola	nucleus	40.05	41.44
CDX88709	Canola	cytosol, plastid	42.12	41.37
CDY24951	Canola	nucleus	39.79	41.07
CDY61251	Canola	cytosol	37.98	40.72
CDY48679	Canola	cytosol, plastid	34.88	40.42
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.5	39.95
Bra002559.1-P	Field mustard	plastid	40.57	39.55
KRH15082	Soybean	nucleus	39.02	39.53
AT2G39720.2	Thale cress	nucleus	40.83	39.4
CDX99105	Canola	cytosol, plastid	32.56	38.89
CDY33046	Canola	plastid	34.11	38.6
KRH73053	Soybean	nucleus	38.24	37.85
AT3G46620.1	Thale cress	cytosol, plastid	38.5	37.72
AT5G59550.2	Thale cress	nucleus, plastid	41.09	31.05
Zm00001d045625_P001	Maize	cytosol	23.77	29.68
Zm00001d047476_P001	Maize	mitochondrion	20.16	26.71
Zm00001d052154_P001	Maize	mitochondrion	21.71	26.42
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.0	26.18
Zm00001d032646_P001	Maize	cytosol	24.29	25.07
Zm00001d018190_P001	Maize	mitochondrion	21.45	24.92
Zm00001d043183_P001	Maize	plastid	20.67	24.62
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	24.29	24.42
Zm00001d040445_P001	Maize	nucleus	21.19	23.7
Zm00001d047560_P001	Maize	cytosol	18.86	23.62
Zm00001d031273_P001	Maize	cytosol, plastid	17.05	22.84
Zm00001d008237_P001	Maize	nucleus	20.41	22.64
Zm00001d038528_P001	Maize	cytosol	19.12	22.22
Zm00001d012564_P001	Maize	mitochondrion	19.64	21.97
Zm00001d010635_P001	Maize	nucleus	16.8	20.83
Zm00001d051736_P001	Maize	cytosol	17.57	20.61
Zm00001d046663_P001	Maize	cytosol	15.76	20.47
Zm00001d013005_P002	Maize	nucleus	17.57	18.33
Zm00001d053704_P001	Maize	cytosol	15.76	17.13

Protein Annotations

EnsemblPlants:Zm00001d011076_P001	EnsemblPlants:Zm00001d011076_T001	EnsemblPlantsGene:Zm00001d011076	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	ProteinID:AQK95610.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0008449EC7	UniProt:A0A1D6FVZ5	MapMan:35.1	:	:	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr8:-:138160358..138161521

Molecular Weight (calculated)

40683.6 Da

IEP (calculated)

7.881

GRAVY (calculated)

-0.333

Length

387 amino acids

Sequence
(BLAST)

001: MAMPSSRSPA PPPTASSSYW CYMCDRFVRA AASSSSSPTS PSSSSPACPS CGGGFLEEMG APPPRARRPR RAARRGADSR ASPFNPVIVL RRSPPADADA
101: DGSSSPAAAT GSSFELFYDD GAGSGLRPLP ESMSDFLMGS GFERLLEQLA QMEAGGGLAA RARDAPPASK AAVDSMPALR VGAAHVAADA HCAVCKEAFE
201: LGAEAREMPC AHIYHADCIL PWLALRNSCP VCRHEMPADN AAPRAAAAAA ADEDARVGLT IWRLPGGGFA VGRFAGGPRP DERELPVVYT EMESGFNFNS
301: GHAPRRISWG ARQAAATDRG TVRRFLRSVF ACFGRGHAPS AAAARAMPEL NDDDVASDHS AAFSRGSRSR STSWRLEDGR ADAMVQR

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.