Factsheet for Bra000143.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07641	Canola	nucleus	98.93	99.2
CDY24951	Canola	nucleus	96.0	96.0
Bra005020.1-P	Field mustard	nucleus, plastid	74.4	81.82
AT2G39720.2	Thale cress	nucleus	84.0	78.55
Os03t0271600-01	Rice	plastid	41.87	56.27
Zm00001d047824_P001	Maize	plastid	41.07	55.4
EER95109	Sorghum	plastid	40.53	55.27
Zm00001d028590_P001	Maize	plastid	40.8	55.04
TraesCS4D01G209500.1	Wheat	plastid	40.8	54.64
TraesCS4B01G209100.1	Wheat	plastid	40.8	54.64
TraesCS4A01G095800.1	Wheat	cytosol	40.8	54.64
GSMUA_Achr7P15040_001	Banana	mitochondrion	43.73	51.9
GSMUA_Achr10P...	Banana	mitochondrion	45.33	50.45
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	44.0	47.01
Os05t0110000-01	Rice	mitochondrion	40.8	45.95
Zm00001d035677_P001	Maize	plastid	42.4	45.69
TraesCS3D01G532300.1	Wheat	cytosol	46.4	45.08
GSMUA_Achr5P07070_001	Banana	nucleus	39.47	44.98
Os01t0972000-01	Rice	nucleus	39.2	44.01
GSMUA_Achr2P19140_001	Banana	mitochondrion	42.4	43.92
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	40.27	43.9
TraesCS3B01G595200.1	Wheat	cytosol	46.67	43.86
KRH73053	Soybean	nucleus	45.07	43.22
HORVU4Hr1G060130.1	Barley	cytosol	40.53	43.18
TraesCS1B01G036900.1	Wheat	cytosol	45.33	42.61
TraesCS1D01G030300.1	Wheat	nucleus	45.6	42.54
HORVU7Hr1G055010.1	Barley	cytosol	25.07	42.53
KRH15082	Soybean	nucleus	43.2	42.41
TraesCS1A01G029800.1	Wheat	cytosol	44.8	42.11
EES17560	Sorghum	plastid	46.13	41.89
GSMUA_Achr10P...	Banana	mitochondrion	44.8	41.79
HORVU1Hr1G004330.14	Barley	cytosol	44.53	41.65
Bra020313.1-P	Field mustard	plastid	43.2	41.65
Bra002559.1-P	Field mustard	plastid	43.73	41.31
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.07	41.29
Bra006709.1-P	Field mustard	plastid	42.93	40.97
Zm00001d011076_P001	Maize	plastid	41.6	40.31
HORVU3Hr1G041030.1	Barley	mitochondrion	40.0	38.76
GSMUA_Achr10P...	Banana	nucleus	28.53	37.94
HORVU3Hr1G115000.7	Barley	mitochondrion	39.2	37.5
Bra001767.1-P	Field mustard	nucleus	17.87	31.31
Bra014684.1-P	Field mustard	nucleus	14.67	28.65
Bra038246.1-P	Field mustard	nucleus	24.0	27.69
Bra030136.1-P	Field mustard	cytosol	17.87	27.69
Bra007253.1-P	Field mustard	mitochondrion, nucleus	22.13	26.77
Bra004589.1-P	Field mustard	nucleus	17.33	26.64
Bra000207.1-P	Field mustard	mitochondrion, nucleus	22.4	26.5
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	22.4	25.85
Bra035835.1-P	Field mustard	nucleus	22.4	25.69
Bra030854.1-P	Field mustard	nucleus	20.27	24.36
Bra037999.1-P	Field mustard	nucleus	18.67	24.14
Bra037800.1-P	Field mustard	cytosol	17.87	22.19
Bra027436.1-P	Field mustard	nucleus	18.13	22.01
Bra037109.1-P	Field mustard	nucleus	19.2	21.56
Bra002823.1-P	Field mustard	nucleus	19.73	21.02
Bra019109.1-P	Field mustard	nucleus	17.87	20.81
Bra011215.1-P	Field mustard	cytosol	12.27	19.83
Bra026444.1-P	Field mustard	nucleus	19.2	19.41
Bra005970.1-P	Field mustard	cytosol	13.33	17.24
Bra014266.1-P	Field mustard	nucleus	20.0	17.01
Bra021467.1-P	Field mustard	nucleus	15.47	14.87
Bra013006.1-P	Field mustard	nucleus	15.47	13.91
Bra028935.1-P	Field mustard	nucleus	21.07	13.91
Bra009323.1-P	Field mustard	cytosol	13.87	13.72
Bra008671.1-P	Field mustard	nucleus	10.4	13.59
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	11.73	11.08

Protein Annotations

EnsemblPlants:Bra000143.1	EnsemblPlants:Bra000143.1-P	EnsemblPlantsGene:Bra000143	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00025401EF	UniProt:M4C7G5	MapMan:35.1	:	:	:

Description

AT2G39720 (E=3e-121) RHC2A | RHC2A; protein binding / zinc ion binding

Coordinates

chrA03:-:9528602..9529729

Molecular Weight (calculated)

40311.8 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.555

Length

375 amino acids

Sequence
(BLAST)

001: MSSSGSYWCY SCSRFVWVSD SISCPDCDGG FLEHIQQSLD FTPPSSFLRH HRSPTRFPPP SSSSSSMHTA ENSPPPPPPT VTRTRSNSSN RSPNPVIVLR
101: GGSNPSESAF QMYYDDGTDS GLRPLPPSMT EFLLGSGFDR LLDQISQIEL TANNNNSCDN PPASKSAVEA LPVIEIDPTH LESDSQSHCA VCKENFELKS
201: AAREMPCNHI YHPDCILPWL AIRNSCPVCR HELPSAGDDG GGGAVVNEEE EDSAAGLTIW RLPGGGFAVG RIPGGWRGGD RMMPVVYTEV DGGRLGDERL
301: PRRVAWGSRR GGREGGGGSR ERSGGFAGRI MRLFGCFSGS SGSVAAGSGS GSRSTRRSSS SFSMFRTASS SRRRH

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.