Factsheet for Bra026444.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89343	Canola	cytosol, mitochondrion	83.02	87.5
CDX94342	Canola	mitochondrion, nucleus	83.83	80.36
AT4G26400.1	Thale cress	nucleus	71.43	74.44
Bra019109.1-P	Field mustard	nucleus	64.15	73.91
Bra002823.1-P	Field mustard	nucleus	54.45	57.39
KRG97316	Soybean	nucleus	48.25	52.03
GSMUA_Achr11P...	Banana	nucleus	35.04	48.15
VIT_06s0004g00120.t01	Wine grape	nucleus	47.71	48.1
Bra027436.1-P	Field mustard	nucleus	39.08	46.93
PGSC0003DMT400046527	Potato	nucleus	44.2	45.56
Bra037109.1-P	Field mustard	nucleus	40.43	44.91
Bra030854.1-P	Field mustard	nucleus	36.66	43.59
Bra028935.1-P	Field mustard	nucleus	60.92	39.79
Bra037999.1-P	Field mustard	nucleus	29.92	38.28
Os03t0812200-01	Rice	nucleus	37.2	37.4
Os05t0488800-01	Rice	nucleus	32.08	36.84
Zm00001d010635_P001	Maize	nucleus	30.73	36.54
TraesCS1B01G316300.1	Wheat	nucleus	31.81	35.54
TraesCS1D01G305300.1	Wheat	nucleus	31.81	35.54
Zm00001d013005_P002	Maize	nucleus	35.31	35.31
Zm00001d038528_P001	Maize	cytosol	31.54	35.14
KXG37275	Sorghum	nucleus	35.85	34.73
Bra001767.1-P	Field mustard	nucleus	19.41	33.64
TraesCS5B01G480100.1	Wheat	nucleus	36.12	33.33
Bra011215.1-P	Field mustard	cytosol	20.75	33.19
HORVU5Hr1G111530.1	Barley	nucleus	35.58	33.17
TraesCS5D01G480800.1	Wheat	nucleus	35.85	32.92
TraesCS5A01G467700.1	Wheat	nucleus	35.85	32.92
KXG22238	Sorghum	plastid	33.96	32.39
HORVU1Hr1G068950.2	Barley	golgi	32.88	31.61
Solyc01g050040.2.1	Tomato	nucleus	23.99	30.48
Bra014684.1-P	Field mustard	nucleus	15.09	29.17
Bra030136.1-P	Field mustard	cytosol	18.33	28.1
Bra004589.1-P	Field mustard	nucleus	18.33	27.87
Bra035835.1-P	Field mustard	nucleus	23.99	27.22
Bra038246.1-P	Field mustard	nucleus	23.18	26.46
Bra007253.1-P	Field mustard	mitochondrion, nucleus	21.83	26.13
Bra000207.1-P	Field mustard	mitochondrion, nucleus	21.29	24.92
Bra037800.1-P	Field mustard	cytosol	18.06	22.19
Bra006709.1-P	Field mustard	plastid	23.18	21.88
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.56	21.45
Bra002559.1-P	Field mustard	plastid	22.1	20.65
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	18.06	20.62
Bra020313.1-P	Field mustard	plastid	21.29	20.31
Bra000143.1-P	Field mustard	nucleus	19.41	19.2
Bra005020.1-P	Field mustard	nucleus, plastid	16.71	18.18
Bra005970.1-P	Field mustard	cytosol	13.21	16.9
Bra014266.1-P	Field mustard	nucleus	18.6	15.65
Bra009323.1-P	Field mustard	cytosol	14.29	13.98
Bra008671.1-P	Field mustard	nucleus	10.78	13.94
Bra021467.1-P	Field mustard	nucleus	14.02	13.33
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.94	12.09
Bra013006.1-P	Field mustard	nucleus	12.94	11.51

Protein Annotations

EnsemblPlants:Bra026444.1	EnsemblPlants:Bra026444.1-P	EnsemblPlantsGene:Bra026444	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547186	UniProt:M4ECD5
MapMan:35.1	:	:	:	:	:

Description

AT4G26400 (E=2e-119) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:-:9274231..9275346

Molecular Weight (calculated)

41735.5 Da

IEP (calculated)

5.723

GRAVY (calculated)

-0.717

Length

371 amino acids

Sequence
(BLAST)

001: MVCFRNERQS LVEKEEAMAA RYWCHMCSQM VNPPVIEAEI KCPFCQSGFV EEMSGELNDG SSIREVQDSE IDFGTDRALS QWGPILLGMM SNPRRRRRFR
101: RTELGLDNDA VNITAADVDG NDSVVDSHHH HHNRRRHRHM QHDGEVDLDR EFDSIIRRRR RSSAAILQLL QGIREGINTE DESSERDQFN TAFNIIRSNT
201: SPSGTGDNFV GTGLAHLLEH LADNDPTRHG SLPARKEAVE SLPTVKICEP LQCSVCLDEF EKGSEAKEMP CKHKFHVGCI VPWLELHSSC PVCRYELPPD
301: DEVKTDLLRP RTRSVETNRS DVEEDARNTS GNERRFSFGW RFSGLFSSSA SSSSGSAASG SSQLNENSNS G

Best Arabidopsis Sequence Match ( AT4G26400.1 )
(BLAST)

001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS

Arabidopsis Description

AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.