CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94342	Canola	mitochondrion, nucleus	92.33	83.98
Bra026444.1-P	Field mustard	nucleus	87.5	83.02
CDX92768	Canola	nucleus	57.67	65.7
CDY42740	Canola	nucleus	59.94	65.53
CDX92770	Canola	nucleus	60.23	65.43
AT4G26400.1	Thale cress	nucleus	65.62	64.89
CDY46577	Canola	nucleus	49.15	59.45
CDY32791	Canola	nucleus	52.84	52.84
KRG97316	Soybean	nucleus	47.16	48.26
GSMUA_Achr11P...	Banana	nucleus	36.08	47.04
CDY43991	Canola	nucleus	39.2	44.66
VIT_06s0004g00120.t01	Wine grape	nucleus	46.31	44.29
CDY26096	Canola	nucleus	36.36	43.54
PGSC0003DMT400046527	Potato	nucleus	44.03	43.06
CDY08249	Canola	cytosol	40.91	42.99
CDY10554	Canola	cytosol	34.94	40.33
CDY56022	Canola	nucleus	35.8	40.26
CDY50031	Canola	cytosol	29.83	36.21
CDY56080	Canola	cytosol	28.98	35.92
Zm00001d010635_P001	Maize	nucleus	31.53	35.58
Os05t0488800-01	Rice	nucleus	32.39	35.29
TraesCS1B01G316300.1	Wheat	nucleus	32.67	34.64
TraesCS1D01G305300.1	Wheat	nucleus	32.67	34.64
Zm00001d038528_P001	Maize	cytosol	32.67	34.53
Os03t0812200-01	Rice	nucleus	36.08	34.42
CDX82271	Canola	cytosol	20.17	33.33
CDY36069	Canola	cytosol	20.17	32.72
Zm00001d013005_P002	Maize	nucleus	34.38	32.61
CDY11934	Canola	nucleus	59.66	32.21
KXG22238	Sorghum	plastid	35.51	32.13
HORVU1Hr1G068950.2	Barley	golgi	35.23	32.12
KXG37275	Sorghum	nucleus	34.66	31.85
CDY72364	Canola	cytosol	19.89	31.53
CDY28208	Canola	cytosol	20.74	31.47
TraesCS5B01G480100.1	Wheat	nucleus	35.8	31.34
HORVU5Hr1G111530.1	Barley	nucleus	35.23	31.16
CDY56081	Canola	nucleus	21.02	30.96
TraesCS5A01G467700.1	Wheat	nucleus	35.51	30.94
TraesCS5D01G480800.1	Wheat	nucleus	35.51	30.94
Solyc01g050040.2.1	Tomato	nucleus	24.72	29.79
CDX75998	Canola	nucleus	15.34	28.12
CDY68603	Canola	cytosol	18.75	27.27
CDY23878	Canola	mitochondrion, nucleus	23.58	27.21
CDY25360	Canola	cytosol, nucleus, plastid	24.72	26.93
CDY24592	Canola	nucleus	24.43	26.79
CDY32333	Canola	cytosol	17.61	26.38
CDY22483	Canola	mitochondrion	22.44	26.07
CDX94665	Canola	nucleus	17.05	25.53
CDY27204	Canola	mitochondrion, nucleus	22.44	25.32
CDY33437	Canola	cytosol	23.3	25.31
CDX79968	Canola	mitochondrion, nucleus	21.31	25.25
CDX72127	Canola	mitochondrion	22.44	25.0
CDY35437	Canola	mitochondrion, nucleus	21.59	23.97
CDY23599	Canola	golgi, mitochondrion	40.62	23.48
CDY22790	Canola	nucleus	17.9	23.33
CDY53450	Canola	cytosol	19.89	21.74
CDX80258	Canola	plastid	21.88	21.69
CDX81263	Canola	cytosol, peroxisome, plastid	17.61	21.38
CDY18690	Canola	cytosol, peroxisome, plastid	17.9	21.07
CDX74533	Canola	cytosol	17.33	20.89
CDY61251	Canola	cytosol	21.31	20.78
CDX94901	Canola	cytosol	18.47	20.7
CDX88709	Canola	cytosol, plastid	23.01	20.56
CDY42507	Canola	cytosol	19.32	20.06
CDX99105	Canola	cytosol, plastid	17.9	19.44
CDY01669	Canola	plastid	17.61	19.2
CDY33046	Canola	plastid	17.9	18.42
CDY48679	Canola	cytosol, plastid	17.05	17.96
CDY07641	Canola	nucleus	19.03	17.91
CDY24951	Canola	nucleus	18.18	17.07
CDY20473	Canola	nucleus, plastid	16.19	17.07
CDX74839	Canola	cytosol, plastid	15.62	16.98
CDY01221	Canola	cytosol	9.66	15.6
CDX78323	Canola	cytosol	12.5	15.28
CDY69134	Canola	cytosol	12.22	14.78
CDX90972	Canola	cytosol	13.35	14.03
CDY03622	Canola	nucleus	17.61	13.9
CDX69496	Canola	cytosol	11.36	13.89
CDY58938	Canola	nucleus	17.33	13.83
CDX69973	Canola	cytosol	13.92	13.61
CDY26465	Canola	cytosol	13.07	13.57
CDY21513	Canola	cytosol	13.35	13.2
CDY34722	Canola	cytosol	14.2	12.82
CDY34721	Canola	cytosol	14.2	12.82
CDX85531	Canola	cytosol	12.22	12.54
CDY02194	Canola	peroxisome	12.5	11.06
CDY51628	Canola	peroxisome	12.5	10.84

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DQ45	EnsemblPlants:CDX89343	ProteinID:CDX89343	ProteinID:CDX89343.1
EnsemblPlantsGene:GSBRNA2T00149568001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE3D83	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA01g15500D

Coordinates

chrLK031858:+:1000894..1002725

Molecular Weight (calculated)

39365.2 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.492

Length

352 amino acids

Sequence
(BLAST)

001: MGFRIGSATN YSRSYLFPLD LQKVGTFARE LDFLTNLLRY LVEKEEAMAA RYWCHMCSLM VNPPVIEAEI KCPFCQSGFV EEMSGELNDG SSIREVQDSE
101: IDFGTDRALS QWGPILLGMM SNPRRQVDLD REFDSIIRRR RRSSAAILQL LQGIREGINT EDESSERNQF NTAFNIIRSN TSPSGTGDNF VGTGLAHLLE
201: HLADNDPIRH GSLPSRKEAV ESLPTVKICE PLQCSICLDE FEKGSEAKEM PCKHKFHVGC IVPWLELHSS CPVCRYELPP DDEVKPDLLR PRTRSVETNR
301: SDVEEDARNT SGNERRFSFG WRFSGLFSSS ASSSSGSAAS GSSQLNENSN SG

Best Arabidopsis Sequence Match ( AT4G26400.1 )
(BLAST)

001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS

Arabidopsis Description

AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.