CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001767.1-P	Field mustard	nucleus	96.24	95.79
CDY36069	Canola	cytosol	94.37	92.63
CDY72364	Canola	cytosol	82.63	79.28
CDY33437	Canola	cytosol	82.63	54.32
CDY24592	Canola	nucleus	79.34	52.65
CDY25360	Canola	cytosol, nucleus, plastid	79.34	52.32
AT3G19950.2	Thale cress	cytosol	81.22	44.82
CDY22790	Canola	nucleus	47.42	37.41
KRH36132	Soybean	nucleus	48.36	36.01
KRG90622	Soybean	nucleus	49.3	35.23
PGSC0003DMT400082489	Potato	nucleus	53.05	35.09
Zm00001d045625_P001	Maize	cytosol	50.7	34.84
Solyc04g009170.1.1	Tomato	nucleus	50.23	34.63
EER89027	Sorghum	nucleus	50.7	33.64
VIT_17s0053g00320.t01	Wine grape	plastid	54.93	31.71
TraesCS7D01G000400.1	Wheat	cytosol	48.83	31.52
Os06t0101300-01	Rice	nucleus	49.77	31.36
TraesCS4A01G499200.1	Wheat	cytosol, mitochondrion	48.36	30.75
CDY42507	Canola	cytosol	46.95	29.5
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	46.95	28.01
CDX75998	Canola	nucleus	24.88	27.6
CDY46577	Canola	nucleus	35.68	26.12
CDY26096	Canola	nucleus	34.27	24.83
CDY22483	Canola	mitochondrion	33.33	23.43
CDY56081	Canola	nucleus	26.29	23.43
CDY35437	Canola	mitochondrion, nucleus	34.74	23.34
CDY43991	Canola	nucleus	33.8	23.3
CDY23878	Canola	mitochondrion, nucleus	33.33	23.28
CDY08249	Canola	cytosol	36.15	22.99
CDX92768	Canola	nucleus	33.33	22.98
CDY10554	Canola	cytosol	32.86	22.95
CDX72127	Canola	mitochondrion	33.8	22.78
CDY27204	Canola	mitochondrion, nucleus	32.86	22.44
CDY28208	Canola	cytosol	24.41	22.41
CDY56022	Canola	nucleus	32.86	22.36
CDX94901	Canola	cytosol	32.86	22.29
CDX92770	Canola	nucleus	33.33	21.91
CDY50031	Canola	cytosol	29.58	21.72
CDY32791	Canola	nucleus	35.68	21.59
CDY56080	Canola	cytosol	28.64	21.48
CDY42740	Canola	nucleus	32.39	21.43
CDY32333	Canola	cytosol	23.47	21.28
CDX79968	Canola	mitochondrion, nucleus	28.17	20.2
CDX89343	Canola	cytosol, mitochondrion	33.33	20.17
CDX94665	Canola	nucleus	22.07	20.0
CDY68603	Canola	cytosol	22.54	19.83
CDX80258	Canola	plastid	32.39	19.44
CDX81263	Canola	cytosol, peroxisome, plastid	26.29	19.31
CDX88709	Canola	cytosol, plastid	35.68	19.29
CDX74533	Canola	cytosol	26.29	19.18
CDY61251	Canola	cytosol	32.39	19.11
CDY53450	Canola	cytosol	28.64	18.94
CDX94342	Canola	mitochondrion, nucleus	34.27	18.86
CDY20473	Canola	nucleus, plastid	29.58	18.86
CDY18690	Canola	cytosol, peroxisome, plastid	26.29	18.73
CDX74839	Canola	cytosol, plastid	27.7	18.21
CDY01669	Canola	plastid	27.23	17.96
CDY24951	Canola	nucleus	30.99	17.6
CDY33046	Canola	plastid	28.17	17.54
CDY07641	Canola	nucleus	30.52	17.38
CDY48679	Canola	cytosol, plastid	27.23	17.37
CDX99105	Canola	cytosol, plastid	26.29	17.28
CDY69134	Canola	cytosol	22.54	16.49
CDX78323	Canola	cytosol	22.07	16.32
CDY01221	Canola	cytosol	15.96	15.6
CDX90972	Canola	cytosol	24.41	15.52
CDX85531	Canola	cytosol	24.41	15.16
CDY58938	Canola	nucleus	30.52	14.74
CDY03622	Canola	nucleus	30.52	14.57
CDX69496	Canola	cytosol	18.31	13.54
CDY26465	Canola	cytosol	21.13	13.27
CDX69973	Canola	cytosol	21.6	12.78
CDY21513	Canola	cytosol	21.13	12.64
CDY34722	Canola	cytosol	23.0	12.56
CDY34721	Canola	cytosol	22.54	12.31
CDY11934	Canola	nucleus	37.09	12.12
CDY02194	Canola	peroxisome	22.54	12.06
CDY23599	Canola	golgi, mitochondrion	33.8	11.82
CDY51628	Canola	peroxisome	22.54	11.82

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CYL3
EnsemblPlants:CDX82271	ProteinID:CDX82271	ProteinID:CDX82271.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00137373001	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR44679	PANTHER:PTHR44679:SF1	SMART:SM00184	SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI0004EF071C
InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaA03g35500D

Coordinates

chrLK031828:-:335204..336569

Molecular Weight (calculated)

23205.9 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.701

Length

213 amino acids

Sequence
(BLAST)

001: MQPRSTRNDA FDPVSFLQNH LQHLRSSGTH VQFVIENHPS DQSNRVPGNL GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAVDGLPSV KVTKDMVRSE
101: MNQCAVCMDE FEDGGDVKQM PCKHVFHQDC LMPWLELHNS CPVCRYELPT DDPEYESRGQ GQGGEASGAV ETGRRFSIQV PLPFRGLDGE GSGSGAPGSG
201: GGANLETRGD DLD

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.