Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82271 | Canola | cytosol | 31.71 | 54.93 |
| CDY72364 | Canola | cytosol | 32.52 | 54.05 |
| CDY36069 | Canola | cytosol | 31.71 | 53.92 |
| Bra001767.1-P | Field mustard | nucleus | 30.89 | 53.27 |
| Bra038246.1-P | Field mustard | nucleus | 44.44 | 50.46 |
| KRH09399 | Soybean | nucleus | 50.41 | 50.41 |
| CDY33437 | Canola | cytosol | 43.09 | 49.07 |
| KRH38895 | Soybean | nucleus | 49.86 | 48.94 |
| CDY24592 | Canola | nucleus | 40.38 | 46.42 |
| PGSC0003DMT400026380 | Potato | nucleus | 48.51 | 46.25 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 40.38 | 46.13 |
| Bra035835.1-P | Field mustard | nucleus | 40.38 | 45.57 |
| EER89027 | Sorghum | nucleus | 38.21 | 43.93 |
| Solyc03g098590.2.1 | Tomato | cytosol | 43.9 | 43.9 |
| Zm00001d045625_P001 | Maize | cytosol | 36.86 | 43.87 |
| Os06t0101300-01 | Rice | nucleus | 39.57 | 43.2 |
| CDY22790 | Canola | nucleus | 31.17 | 42.59 |
| AT3G19950.2 | Thale cress | cytosol | 44.44 | 42.49 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 36.31 | 40.0 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 35.23 | 39.39 |
| CDY42507 | Canola | cytosol | 34.15 | 37.17 |
| PGSC0003DMT400069320 | Potato | nucleus | 40.11 | 36.82 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 35.5 | 36.69 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 27.64 | 32.48 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 26.29 | 28.87 |
| VIT_17s0000g08400.t01 | Wine grape | nucleus | 11.11 | 28.67 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 24.39 | 27.03 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 18.7 | 26.44 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 26.02 | 26.09 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 26.02 | 24.87 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 20.87 | 23.05 |
| VIT_08s0007g00720.t01 | Wine grape | plastid | 25.47 | 18.22 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 20.87 | 17.07 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 16.53 | 15.6 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 17.07 | 14.35 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 21.68 | 13.56 |
Protein Annotations
| EntrezGene:100244372 | wikigene:100244372 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM479559 | ProteinID:CAN79596 |
| ProteinID:CAN79596.1 | ProteinID:CCB58791 | ProteinID:CCB58791.1 | UniProt:F6HVS8 | EMBL:FN596258 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100244372 | wikigene:LOC100244372 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:TC67934 |
| UniParc:UPI00015CC045 | ArrayExpress:VIT_17s0053g00320 | EnsemblPlantsGene:VIT_17s0053g00320 | EnsemblPlants:VIT_17s0053g00320.t01 | unigene:Vvi.15905 | RefSeq:XP_002267134 |
| RefSeq:XP_002267134.1 | RefSeq:XP_003634328 | RefSeq:XP_003634328.1 | RefSeq:XP_019082148.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr17:-:14868182..14869346
Molecular Weight (calculated)
38606.3 Da
IEP (calculated)
4.191
GRAVY (calculated)
-0.412
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSGFSGGS GGGGPGGGSA APQSYFCYQC NLTVSITPSP TSDPLCPHCN DGFLEEVENP NPNPIPVPIP NPFLGFSDLP SLSAAGATAT AFPPLVFSTA
101: AGGSIDLQNS VDFPGLFGAD PDAFHPFAFL QNYLQTLRAG GTNVQFVIDG NSPEGTFRLS PNLGDYFIGP GLEQLIQQLA ENDPNRYGTP PASKSAIEGL
201: PTIRITVELL GTDSSQCAVC KDSFELDEEA KQMPCKHIYH NDCILPWLEL HNSCPVCRYE LPTDDPDYEH RTRGGQVNQT GGNAAAVAAA GAASNSASGA
301: AGGAAVSGEN PNPQTPRTAD RMFRISFPWP FRTFGSPAET SNSNNDGGSN PGNRANQESG SENRQGDQT
101: AGGSIDLQNS VDFPGLFGAD PDAFHPFAFL QNYLQTLRAG GTNVQFVIDG NSPEGTFRLS PNLGDYFIGP GLEQLIQQLA ENDPNRYGTP PASKSAIEGL
201: PTIRITVELL GTDSSQCAVC KDSFELDEEA KQMPCKHIYH NDCILPWLEL HNSCPVCRYE LPTDDPDYEH RTRGGQVNQT GGNAAAVAAA GAASNSASGA
301: AGGAAVSGEN PNPQTPRTAD RMFRISFPWP FRTFGSPAET SNSNNDGGSN PGNRANQESG SENRQGDQT
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.