Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 38.46 | 14.95 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 25.17 | 11.46 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 28.67 | 11.11 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 28.67 | 10.62 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 18.88 | 10.34 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 23.78 | 10.12 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 18.18 | 7.81 |
| VIT_08s0007g00720.t01 | Wine grape | plastid | 27.27 | 7.56 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 17.48 | 7.49 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 22.38 | 7.1 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 15.38 | 5.63 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 16.08 | 5.24 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 19.58 | 4.75 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB42977 | ProteinID:CCB42977.1 | UniProt:F6GSQ4 | EMBL:FN594950 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44576 |
| PANTHER:PTHR44576:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000210892E | ArrayExpress:VIT_17s0000g08400 | EnsemblPlantsGene:VIT_17s0000g08400 |
| EnsemblPlants:VIT_17s0000g08400.t01 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:+:9599237..9601123
Molecular Weight (calculated)
16054.2 Da
IEP (calculated)
6.489
GRAVY (calculated)
-0.070
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSVKSKENL QCSVCLDDFE ISAEAGEMPC KHKFHSGCIL PWLELHSSCP VRMFQIAADE SKLDSDASQN VSSNNGHGSS EGGVRFFCSA SSLVLRLFNG
101: SDQAWKSVTN LPWKLTRQSL FLECFSLLLL WFLLQRTQMT LQF
101: SDQAWKSVTN LPWKLTRQSL FLECFSLLLL WFLLQRTQMT LQF
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.