Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71659 | Soybean | nucleus | 65.92 | 66.99 |
| KRH33121 | Soybean | nucleus | 63.69 | 64.72 |
| Os03t0351800-01 | Rice | nucleus | 53.18 | 59.01 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 63.06 | 58.93 |
| EER92269 | Sorghum | nucleus | 52.23 | 57.54 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 41.72 | 56.71 |
| Zm00001d047476_P001 | Maize | mitochondrion | 52.23 | 56.16 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 51.59 | 56.06 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 51.27 | 55.71 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 45.86 | 55.6 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 50.96 | 55.56 |
| CDY35437 | Canola | mitochondrion, nucleus | 55.73 | 55.2 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 55.73 | 55.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.22 | 55.04 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 50.64 | 55.02 |
| AT2G40830.4 | Thale cress | mitochondrion | 57.01 | 54.57 |
| CDY22483 | Canola | mitochondrion | 52.55 | 54.46 |
| AT3G56580.1 | Thale cress | mitochondrion | 54.46 | 53.44 |
| Bra004589.1-P | Field mustard | nucleus | 41.08 | 52.87 |
| CDY23878 | Canola | mitochondrion, nucleus | 51.27 | 52.79 |
| CDX79968 | Canola | mitochondrion, nucleus | 48.73 | 51.52 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 49.36 | 50.0 |
| CDY27204 | Canola | mitochondrion, nucleus | 49.68 | 50.0 |
| CDX72127 | Canola | mitochondrion | 49.36 | 49.05 |
| Bra014684.1-P | Field mustard | nucleus | 28.98 | 47.4 |
| CDX75998 | Canola | nucleus | 28.98 | 47.4 |
| PGSC0003DMT400079301 | Potato | nucleus | 44.59 | 46.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 44.59 | 46.51 |
| GSMUA_Achr11P... | Banana | mitochondrion | 42.68 | 44.82 |
| CDX94901 | Canola | cytosol | 41.08 | 41.08 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 33.12 | 31.23 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 23.89 | 28.74 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 32.48 | 27.64 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 33.12 | 26.94 |
| VIT_17s0000g08400.t01 | Wine grape | nucleus | 11.46 | 25.17 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 28.03 | 23.91 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 22.61 | 21.26 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 28.34 | 19.73 |
| VIT_08s0007g00720.t01 | Wine grape | plastid | 28.98 | 17.64 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 17.83 | 14.32 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 18.47 | 13.21 |
| VIT_08s0056g00320.t01 | Wine grape | mitochondrion | 23.89 | 12.71 |
Protein Annotations
| EntrezGene:100265395 | Gene3D:3.30.40.10 | MapMan:35.1 | ProteinID:CCB57143 | ProteinID:CCB57143.1 | UniProt:F6HQR2 |
| EMBL:FN596008 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 |
| GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:TC59974 |
| UniParc:UPI0001983C70 | ArrayExpress:VIT_08s0040g00590 | EnsemblPlantsGene:VIT_08s0040g00590 | EnsemblPlants:VIT_08s0040g00590.t01 | unigene:Vvi.23 | RefSeq:XP_010653661.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:+:11540810..11542129
Molecular Weight (calculated)
34847.4 Da
IEP (calculated)
7.806
GRAVY (calculated)
-0.752
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGNTHWC YRCRRPVRLR GRDAVCPNCN GGFIQELNDM VSISPIDFLG LDTDEDRDRR FGIMEAFSAF MRHRLAGINQ NHDIRGRSGS VPEHGQGFPS
101: LFFGGQIPLR LSDTGGIEVL WNGPHGIGAT RGNVGDYFIG PGLEELFEQL SVNDRRGPPP ASRSSIDAMP TIKITQKHLR SDSHCPVCKD RFELGSEARK
201: MPCNHIYHSD CIVPWLVQHN SCPVCRHELP PQGSSRGHSH QTSSSGNRSS SYSSNSNGRE NGRDNQGRRS AWSLLWPFRS SNSSSHHNET GGSSSATVHE
301: DIHQQTGYHG WPFD
101: LFFGGQIPLR LSDTGGIEVL WNGPHGIGAT RGNVGDYFIG PGLEELFEQL SVNDRRGPPP ASRSSIDAMP TIKITQKHLR SDSHCPVCKD RFELGSEARK
201: MPCNHIYHSD CIVPWLVQHN SCPVCRHELP PQGSSRGHSH QTSSSGNRSS SYSSNSNGRE NGRDNQGRRS AWSLLWPFRS SNSSSHHNET GGSSSATVHE
301: DIHQQTGYHG WPFD
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.