Factsheet for VIT_08s0007g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	44.57	59.59
KRH49133	Soybean	plastid	33.33	56.03
KRG99997	Soybean	plastid	33.72	55.77
VIT_08s0040g00590.t01	Wine grape	nucleus	17.64	28.98
VIT_17s0000g08400.t01	Wine grape	nucleus	7.56	27.27
VIT_18s0001g03270.t01	Wine grape	nucleus	17.25	26.73
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	13.37	26.44
VIT_17s0053g00320.t01	Wine grape	plastid	18.22	25.47
VIT_06s0009g02350.t01	Wine grape	mitochondrion	16.28	25.0
VIT_06s0004g00120.t01	Wine grape	nucleus	16.67	23.37
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	14.34	22.16
VIT_12s0034g01390.t01	Wine grape	mitochondrion	14.15	16.19
VIT_14s0083g00710.t01	Wine grape	nucleus	11.43	15.09
VIT_08s0056g00320.t01	Wine grape	mitochondrion	17.25	15.08
VIT_17s0000g04730.t01	Wine grape	nucleus	12.6	14.81

Protein Annotations

EntrezGene:100244277	wikigene:100244277	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM450723	ProteinID:CAN82964
ProteinID:CAN82964.1	ProteinID:CCB55573	ProteinID:CCB55573.1	InterPro:DUF1117	UniProt:F6HL86	EMBL:FN595991
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100244277	wikigene:LOC100244277	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184
SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0002109660	ArrayExpress:VIT_08s0007g00720	EnsemblPlantsGene:VIT_08s0007g00720	EnsemblPlants:VIT_08s0007g00720.t01
RefSeq:XP_002269373	RefSeq:XP_002269373.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:14916670..14922764

Molecular Weight (calculated)

57584.4 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.313

Length

516 amino acids

Sequence
(BLAST)

001: MRYCIHIFTS FVNITLAEAC SPTPLPNSRY CHYVSKHNKR RVLTVRILQD SLKALDLHSP SSSPLCLSVG AVNFLHQLGF FSHFCISWLF DFCLRFGLFW
101: LKSVESELRE ISRKGNNPRF RSILNLDIDL LDAEDRSIRE MMAASGSSFW CYRCNRFIRV WAQDAILCPD CGSGFVEQIN NLSRSPRRRR LPGSAMYLEN
201: RNALDQDPVP RIRRARRSGG DRSLFNPVIV LRGSADVNGS EGGGTSGERG NFELYYDDGT GSGLRPLPAS VSEFLMGSGF DRLLDQLAQL EINGAGRCEH
301: PPASKAAVES LPTIKIVASH VLSESHCAVC KEPFELDSEA RELPCKHIYH SDCILPWLSL RNSCPVCRHE LPTDSHEGGS SGHLQSPGLT EEDNVGLTIW
401: RLPGGGFAVG RFTGGRQAAE RELPVVFTEM DGGFNPSGAS RRNPWVASGI RSREGGGFGR VMRNFLSVFG RFRISSSRSS QETGSRQGSH PETVFERSSR
501: RHNQVLISYC MLFYDF

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.