CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99997	Soybean	plastid	94.79	93.27
KRH10229	Soybean	nucleus	47.88	46.82
KRH23103	Soybean	nucleus	47.56	46.5
KRH24759	Soybean	nucleus	51.79	44.04
KRH29763	Soybean	nucleus	50.16	42.66
KRG97885	Soybean	mitochondrion	49.19	42.3
KRH30994	Soybean	nucleus	53.09	41.48
KRH15082	Soybean	nucleus	46.58	37.43
KRH73053	Soybean	nucleus	46.58	36.57
VIT_08s0007g00720.t01	Wine grape	plastid	56.03	33.33
KRH18634	Soybean	nucleus	20.2	26.27
KRH33121	Soybean	nucleus	25.08	24.92
KRH71659	Soybean	nucleus	24.76	24.6
KRH18631	Soybean	nucleus	23.78	23.86
KRH36132	Soybean	nucleus	22.15	23.78
KRG90622	Soybean	nucleus	22.48	23.15
KRH14643	Soybean	nucleus	24.76	22.62
KRH38895	Soybean	nucleus	27.36	22.34
KRH09399	Soybean	nucleus	26.38	21.95
KRH70139	Soybean	nucleus	22.48	21.63
KRH64713	Soybean	nucleus	24.76	21.59
KRH08483	Soybean	cytosol, nucleus, plastid	22.15	21.12
KRG97316	Soybean	nucleus	23.13	20.64
KRH10441	Soybean	mitochondrion	21.5	20.56
KRG90607	Soybean	nucleus	22.48	20.47
KRH73496	Soybean	mitochondrion	24.43	20.22
KRH36150	Soybean	nucleus	21.82	20.12
KRH44018	Soybean	mitochondrion	19.87	19.24
KRH56750	Soybean	cytosol	15.31	13.74
KRH03189	Soybean	nucleus	15.31	13.24
KRH18313	Soybean	nucleus	15.31	12.57
KRH40635	Soybean	nucleus, plastid	20.85	11.62
KRG93748	Soybean	nucleus, plastid	14.01	11.32
KRH00522	Soybean	plastid	20.2	11.09

Protein Annotations

EntrezGene:100798563	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02004331	InterPro:DUF1117	EnsemblPlantsGene:GLYMA_07G134600
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K7L1H7	EnsemblPlants:KRH49133	ProteinID:KRH49133
ProteinID:KRH49133.1	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF2	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002338D84	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:15965409..15967145

Molecular Weight (calculated)

33264.1 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.305

Length

307 amino acids

Sequence
(BLAST)

001: MASLGSPSSF WCYRCNRIVR VPQNHAVLLC PDCNSGFLEE LQTPPHSRRS TRGGGGSPFN PVIVLRNAND VVSPETRNFE LYYNDAVSGS SGPSSLRPLP
101: QGVSEFLMGS GFDNVLDQLD AAAGGAGALP PTAASKAAIE SMPVVKILAS HTYAESHCAV CMENFEINCD AREMPCGHVY HSECIVPWLS VRNSCPVCRH
201: EVPSDEVEES NNNTVGLTIW RLPGGGFAVG RFIGGRELPL VYTEMDGGFN GANGVPRRVA WDSSVGRSRE NRGFGAAFRN VFSYIGRVRS SFSRRTRNSR
301: ANGRSRS

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.