CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14643	Soybean	nucleus	76.01	83.93
KRH18631	Soybean	nucleus	55.8	67.65
EER92269	Sorghum	nucleus	41.78	54.39
KRH18634	Soybean	nucleus	34.5	54.24
Os03t0351800-01	Rice	nucleus	41.24	54.06
Zm00001d047476_P001	Maize	mitochondrion	42.05	53.42
KRH71659	Soybean	nucleus	44.47	53.4
GSMUA_Achr8P09890_001	Banana	nucleus	32.88	52.81
KRH33121	Soybean	nucleus	43.94	52.75
TraesCS3A01G440000.1	Wheat	mitochondrion	40.43	51.9
TraesCS3D01G432800.1	Wheat	mitochondrion	40.16	51.56
TraesCS3B01G474100.1	Wheat	mitochondrion	39.89	51.39
HORVU3Hr1G096110.1	Barley	mitochondrion	39.35	50.52
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	34.5	49.42
Bra000207.1-P	Field mustard	mitochondrion, nucleus	41.24	48.27
CDY35437	Canola	mitochondrion, nucleus	41.24	48.27
AT2G40830.4	Thale cress	mitochondrion	42.32	47.87
CDY22483	Canola	mitochondrion	38.54	47.19
Bra004589.1-P	Field mustard	nucleus	30.73	46.72
CDX79968	Canola	mitochondrion, nucleus	37.2	46.46
CDY23878	Canola	mitochondrion, nucleus	37.74	45.9
Bra007253.1-P	Field mustard	mitochondrion, nucleus	37.74	45.16
GSMUA_AchrUn_...	Banana	nucleus	31.27	44.96
AT3G56580.1	Thale cress	mitochondrion	38.54	44.69
CDX72127	Canola	mitochondrion	37.74	44.3
CDY27204	Canola	mitochondrion, nucleus	37.2	44.23
Bra014684.1-P	Field mustard	nucleus	22.1	42.71
CDX75998	Canola	nucleus	22.1	42.71
GSMUA_Achr11P...	Banana	mitochondrion	33.69	41.81
CDX94901	Canola	cytosol	31.0	36.62
KRH36132	Soybean	nucleus	20.75	26.92
KRG90622	Soybean	nucleus	21.02	26.17
KRH64713	Soybean	nucleus	24.8	26.14
KRH10229	Soybean	nucleus	21.56	25.48
KRH23103	Soybean	nucleus	21.29	25.16
KRH30994	Soybean	nucleus	26.15	24.68
KRH09399	Soybean	nucleus	24.53	24.66
KRH49133	Soybean	plastid	20.22	24.43
KRG97316	Soybean	nucleus	22.64	24.42
KRG99997	Soybean	plastid	20.49	24.36
KRH10441	Soybean	mitochondrion	21.02	24.3
KRG97885	Soybean	mitochondrion	23.18	24.09
KRH38895	Soybean	nucleus	24.26	23.94
KRH44018	Soybean	mitochondrion	20.22	23.66
KRH29763	Soybean	nucleus	22.91	23.55
KRH24759	Soybean	nucleus	22.64	23.27
KRH70139	Soybean	nucleus	18.87	21.94
KRH15082	Soybean	nucleus	22.37	21.73
KRG90607	Soybean	nucleus	19.41	21.36
KRH36150	Soybean	nucleus	18.87	21.02
KRH73053	Soybean	nucleus	21.83	20.72
KRH08483	Soybean	cytosol, nucleus, plastid	17.79	20.5
KRH56750	Soybean	cytosol	15.09	16.37
KRH03189	Soybean	nucleus	14.29	14.93
KRG93748	Soybean	nucleus, plastid	14.29	13.95
KRH00522	Soybean	plastid	19.95	13.24
KRH18313	Soybean	nucleus	13.21	13.1
KRH40635	Soybean	nucleus, plastid	19.41	13.07

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02001279	EnsemblPlantsGene:GLYMA_02G276700	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7KB55	EnsemblPlants:KRH73496	ProteinID:KRH73496	ProteinID:KRH73496.1	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF5	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002967C7C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:45963068..45965322

Molecular Weight (calculated)

41653.9 Da

IEP (calculated)

8.953

GRAVY (calculated)

-0.682

Length

371 amino acids

Sequence
(BLAST)

001: MRLFPQWNKP QKQKKVFSLS LSFSLKLRIS RTKVEFWCIF YKLRILLKRR RMSSGATHWC HACRQPVVLD GRDAVCPYCD GGFVQELDEL EGIAPHHTFC
101: SQSGEFHQMP DIFDAIPAFM GQRGSDQRSR LMDDAVDNFM RHRTAGRNSN FDVRGRSGSR PVPERSWGVF SSGPYLIFHG QVPGSTFAAG SPRGGSRHVD
201: FGDYFMGLGL EELIEQLTMN DRRGPPPAAL SSIDAMPTIK ITQAHLRLDS HCPVCKEKFE LGTEAREMPC NHIYHSDCIV PWLVQHNSCP VCRVELPPQG
301: QASSRGTQNW GGRNDSNTSS SGSNDSSRGR ENSRQNHGRR NPSSFLWPFR SSNSNNNHHS DTGGSSSSNH S

Best Arabidopsis Sequence Match ( AT2G40830.1 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.