Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33121 | Soybean | nucleus | 92.88 | 92.88 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 66.99 | 65.92 |
| AT2G40830.4 | Thale cress | mitochondrion | 59.55 | 56.1 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 57.28 | 55.84 |
| CDY35437 | Canola | mitochondrion, nucleus | 57.28 | 55.84 |
| CDY22483 | Canola | mitochondrion | 54.37 | 55.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.28 | 55.43 |
| Bra004589.1-P | Field mustard | nucleus | 43.69 | 55.33 |
| Os03t0351800-01 | Rice | nucleus | 50.16 | 54.77 |
| CDY23878 | Canola | mitochondrion, nucleus | 53.07 | 53.77 |
| EER92269 | Sorghum | nucleus | 49.51 | 53.68 |
| CDX79968 | Canola | mitochondrion, nucleus | 50.81 | 52.86 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 39.48 | 52.81 |
| Zm00001d047476_P001 | Maize | mitochondrion | 49.51 | 52.4 |
| KRH14643 | Soybean | nucleus | 56.96 | 52.38 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 48.87 | 52.25 |
| AT3G56580.1 | Thale cress | mitochondrion | 54.05 | 52.19 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 48.54 | 51.9 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 48.22 | 51.74 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 48.22 | 51.56 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 43.04 | 51.35 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 50.16 | 50.0 |
| CDY27204 | Canola | mitochondrion, nucleus | 49.84 | 49.36 |
| CDX72127 | Canola | mitochondrion | 49.84 | 48.73 |
| KRH18631 | Soybean | nucleus | 47.25 | 47.71 |
| Bra014684.1-P | Field mustard | nucleus | 29.13 | 46.88 |
| CDX75998 | Canola | nucleus | 29.13 | 46.88 |
| PGSC0003DMT400079301 | Potato | nucleus | 44.98 | 46.33 |
| KRH18634 | Soybean | nucleus | 34.95 | 45.76 |
| Solyc08g075910.1.1 | Tomato | nucleus | 44.34 | 45.51 |
| KRH73496 | Soybean | mitochondrion | 53.4 | 44.47 |
| CDX94901 | Canola | cytosol | 43.69 | 42.99 |
| GSMUA_Achr11P... | Banana | mitochondrion | 41.1 | 42.47 |
| KRH10229 | Soybean | nucleus | 27.18 | 26.75 |
| KRH23103 | Soybean | nucleus | 27.18 | 26.75 |
| KRH36132 | Soybean | nucleus | 24.27 | 26.22 |
| KRG90622 | Soybean | nucleus | 24.92 | 25.84 |
| KRG99997 | Soybean | plastid | 25.57 | 25.32 |
| KRG97316 | Soybean | nucleus | 28.16 | 25.29 |
| KRH38895 | Soybean | nucleus | 30.74 | 25.27 |
| KRH24759 | Soybean | nucleus | 29.45 | 25.21 |
| KRH29763 | Soybean | nucleus | 29.45 | 25.21 |
| KRH09399 | Soybean | nucleus | 30.1 | 25.2 |
| KRH49133 | Soybean | plastid | 24.6 | 24.76 |
| KRH10441 | Soybean | mitochondrion | 25.57 | 24.61 |
| KRG97885 | Soybean | mitochondrion | 28.16 | 24.37 |
| KRH30994 | Soybean | nucleus | 30.74 | 24.17 |
| KRH44018 | Soybean | mitochondrion | 24.6 | 23.97 |
| KRH64713 | Soybean | nucleus | 27.18 | 23.86 |
| KRH73053 | Soybean | nucleus | 26.54 | 20.97 |
| KRH15082 | Soybean | nucleus | 25.89 | 20.94 |
| KRH70139 | Soybean | nucleus | 21.36 | 20.69 |
| KRH36150 | Soybean | nucleus | 22.01 | 20.42 |
| KRG90607 | Soybean | nucleus | 22.01 | 20.18 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 20.06 | 19.25 |
| KRH56750 | Soybean | cytosol | 19.09 | 17.25 |
| KRH03189 | Soybean | nucleus | 18.12 | 15.77 |
| KRH18313 | Soybean | nucleus | 17.48 | 14.44 |
| KRH00522 | Soybean | plastid | 25.57 | 14.13 |
| KRG93748 | Soybean | nucleus, plastid | 17.15 | 13.95 |
| KRH40635 | Soybean | nucleus, plastid | 24.6 | 13.79 |
Protein Annotations
| EntrezGene:100787523 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02001027 | EnsemblPlantsGene:GLYMA_02G161600 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| UniProt:I1JFQ7 | InterPro:IPR001841 | InterPro:IPR013083 | ProteinID:KRH71657.1 | ProteinID:KRH71658.1 | EnsemblPlants:KRH71659 |
| ProteinID:KRH71659 | ProteinID:KRH71659.1 | ProteinID:KRH71660.1 | ProteinID:KRH71661.1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002337029 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:20504304..20507119
Molecular Weight (calculated)
34491.0 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.706
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSRNTHWC YSCRRPVWLG RRDAVCPSCN EGFVHELNDM VHVNPFDLFE MDNNEERDQR LGLMETFSAF MRHQMADRGR SHDIRAQTDS NPEHSAGFAP
101: LLIFGGQIPF RLSGHGGFEA LFNGAPGIGL TRGNTGDYFI GPGLEELFEQ LSANNRQGPP PASRSSIDAM PTIKITQRHL RSDSHCPVCK DKFEVGSEAR
201: QMPCNHLYHS DCIVPWLVQH NSCPVCRQEL LPQGLSSSNR STNGRSRSAS LSSSGRESHG RRNPFSFLWP FRSSHSSSND EATGSSSPTP TIPENSHHHH
301: AGYSGWPFE
101: LLIFGGQIPF RLSGHGGFEA LFNGAPGIGL TRGNTGDYFI GPGLEELFEQ LSANNRQGPP PASRSSIDAM PTIKITQRHL RSDSHCPVCK DKFEVGSEAR
201: QMPCNHLYHS DCIVPWLVQH NSCPVCRQEL LPQGLSSSNR STNGRSRSAS LSSSGRESHG RRNPFSFLWP FRSSHSSSND EATGSSSPTP TIPENSHHHH
301: AGYSGWPFE
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.