Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36132 | Soybean | nucleus | 85.57 | 89.16 |
| CDY36069 | Canola | cytosol | 36.24 | 49.77 |
| CDX82271 | Canola | cytosol | 35.23 | 49.3 |
| Bra001767.1-P | Field mustard | nucleus | 34.9 | 48.6 |
| CDY72364 | Canola | cytosol | 35.91 | 48.2 |
| Solyc04g009170.1.1 | Tomato | nucleus | 44.63 | 43.04 |
| PGSC0003DMT400082489 | Potato | nucleus | 45.64 | 42.24 |
| Bra038246.1-P | Field mustard | nucleus | 45.64 | 41.85 |
| CDY33437 | Canola | cytosol | 45.3 | 41.67 |
| CDY24592 | Canola | nucleus | 44.63 | 41.43 |
| CDY22790 | Canola | nucleus | 36.91 | 40.74 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 43.62 | 40.25 |
| Bra035835.1-P | Field mustard | nucleus | 43.62 | 39.76 |
| AT3G19950.2 | Thale cress | cytosol | 47.65 | 36.79 |
| KRH38895 | Soybean | nucleus | 45.64 | 36.17 |
| Zm00001d045625_P001 | Maize | cytosol | 37.58 | 36.13 |
| CDY42507 | Canola | cytosol | 40.27 | 35.4 |
| KRH09399 | Soybean | nucleus | 43.62 | 35.23 |
| EER89027 | Sorghum | nucleus | 36.91 | 34.27 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 38.26 | 34.03 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 37.58 | 33.94 |
| Os06t0101300-01 | Rice | nucleus | 38.26 | 33.73 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 37.25 | 31.09 |
| KRH18631 | Soybean | nucleus | 27.52 | 26.8 |
| KRH71659 | Soybean | nucleus | 25.84 | 24.92 |
| KRG97316 | Soybean | nucleus | 28.52 | 24.71 |
| KRH18634 | Soybean | nucleus | 19.46 | 24.58 |
| KRH33121 | Soybean | nucleus | 24.83 | 23.95 |
| KRH10229 | Soybean | nucleus | 25.17 | 23.89 |
| KRH23103 | Soybean | nucleus | 24.5 | 23.25 |
| KRH14643 | Soybean | nucleus | 26.17 | 23.21 |
| KRH36150 | Soybean | nucleus | 25.5 | 22.82 |
| KRH10441 | Soybean | mitochondrion | 24.5 | 22.74 |
| KRH49133 | Soybean | plastid | 23.15 | 22.48 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 24.16 | 22.36 |
| KRG90607 | Soybean | nucleus | 24.83 | 21.96 |
| KRH30994 | Soybean | nucleus | 28.52 | 21.63 |
| KRH29763 | Soybean | nucleus | 26.17 | 21.61 |
| KRH64713 | Soybean | nucleus | 25.5 | 21.59 |
| KRG99997 | Soybean | plastid | 22.48 | 21.47 |
| KRH70139 | Soybean | nucleus | 22.82 | 21.32 |
| KRG97885 | Soybean | mitochondrion | 25.5 | 21.29 |
| KRH44018 | Soybean | mitochondrion | 22.48 | 21.14 |
| KRH73496 | Soybean | mitochondrion | 26.17 | 21.02 |
| KRH24759 | Soybean | nucleus | 24.83 | 20.5 |
| KRH73053 | Soybean | nucleus | 25.84 | 19.69 |
| KRH15082 | Soybean | nucleus | 25.17 | 19.63 |
| KRH56750 | Soybean | cytosol | 18.79 | 16.37 |
| KRH03189 | Soybean | nucleus | 18.79 | 15.77 |
| KRG93748 | Soybean | nucleus, plastid | 18.46 | 14.47 |
| KRH18313 | Soybean | nucleus | 18.12 | 14.44 |
| KRH40635 | Soybean | nucleus, plastid | 26.17 | 14.16 |
| KRH00522 | Soybean | plastid | 26.17 | 13.95 |
Protein Annotations
| EntrezGene:100785289 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02012628 | EnsemblPlantsGene:GLYMA_20G103700 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 |
| UniProt:I1NF59 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRG90622 | ProteinID:KRG90622 | ProteinID:KRG90622.1 |
| PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF1 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000233DB23 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr20:-:34636767..34639401
Molecular Weight (calculated)
32276.0 Da
IEP (calculated)
4.183
GRAVY (calculated)
-0.614
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGGGGGA KPFFCHVCSQ RITCSDESEP FCPICMESFV EECNPNNPNP NLFTENEESS DSEISFSLLP LFLSSVSRSR PEPDMFDPMV FLQNHIQGLR
101: ADGANIQVDF GHPSEQQGFR LPANIGDYFM GPGLEQFIQQ LADNDPNRYG TPPAAKDAVE NLPTITVDDE LLNSELNQCA VCQDEFEKGS LVTQMPCKHA
201: YHGDCLIPWL RLHNSCPVCR YELPTDDADY ENEVRGNGGD GGSRTGGSGD GGGGSGGGGG GGSNRPVRRT VRIYLRHPDA ADSAQDSAER GWEWGSWD
101: ADGANIQVDF GHPSEQQGFR LPANIGDYFM GPGLEQFIQQ LADNDPNRYG TPPAAKDAVE NLPTITVDDE LLNSELNQCA VCQDEFEKGS LVTQMPCKHA
201: YHGDCLIPWL RLHNSCPVCR YELPTDDADY ENEVRGNGGD GGSRTGGSGD GGGGSGGGGG GGSNRPVRRT VRIYLRHPDA ADSAQDSAER GWEWGSWD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.