Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22790 | Canola | nucleus | 65.19 | 81.85 |
| CDY36069 | Canola | cytosol | 30.68 | 47.93 |
| CDY72364 | Canola | cytosol | 31.27 | 47.75 |
| CDX82271 | Canola | cytosol | 29.5 | 46.95 |
| CDY24592 | Canola | nucleus | 44.25 | 46.73 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 43.36 | 45.51 |
| CDY33437 | Canola | cytosol | 42.77 | 44.75 |
| KRH36132 | Soybean | nucleus | 35.4 | 41.96 |
| KRG90622 | Soybean | nucleus | 35.4 | 40.27 |
| AT3G19950.2 | Thale cress | cytosol | 45.13 | 39.64 |
| Solyc04g009170.1.1 | Tomato | nucleus | 33.63 | 36.89 |
| PGSC0003DMT400082489 | Potato | nucleus | 34.51 | 36.34 |
| Zm00001d045625_P001 | Maize | cytosol | 31.27 | 34.19 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 37.17 | 34.15 |
| EER89027 | Sorghum | nucleus | 32.15 | 33.96 |
| TraesCS7D01G000400.1 | Wheat | cytosol | 32.74 | 33.64 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 32.74 | 33.13 |
| Os06t0101300-01 | Rice | nucleus | 32.45 | 32.54 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 32.45 | 30.81 |
| CDX75998 | Canola | nucleus | 16.81 | 29.69 |
| CDY23878 | Canola | mitochondrion, nucleus | 24.48 | 27.21 |
| CDY22483 | Canola | mitochondrion | 24.19 | 27.06 |
| CDY10554 | Canola | cytosol | 23.89 | 26.56 |
| CDY26096 | Canola | nucleus | 23.01 | 26.53 |
| CDX72127 | Canola | mitochondrion | 24.19 | 25.95 |
| CDX79968 | Canola | mitochondrion, nucleus | 22.71 | 25.93 |
| CDY35437 | Canola | mitochondrion, nucleus | 24.19 | 25.87 |
| CDY27204 | Canola | mitochondrion, nucleus | 23.6 | 25.64 |
| CDY46577 | Canola | nucleus | 21.83 | 25.43 |
| CDY56022 | Canola | nucleus | 22.71 | 24.6 |
| CDX94901 | Canola | cytosol | 22.71 | 24.52 |
| CDY43991 | Canola | nucleus | 22.12 | 24.27 |
| CDY32333 | Canola | cytosol | 16.81 | 24.26 |
| CDY50031 | Canola | cytosol | 20.35 | 23.79 |
| CDX74533 | Canola | cytosol | 20.35 | 23.63 |
| CDY56080 | Canola | cytosol | 19.76 | 23.59 |
| CDY08249 | Canola | cytosol | 23.01 | 23.28 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 19.76 | 23.1 |
| CDX94665 | Canola | nucleus | 15.63 | 22.55 |
| CDY32791 | Canola | nucleus | 23.3 | 22.44 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 19.76 | 22.41 |
| CDY01669 | Canola | plastid | 20.94 | 21.98 |
| CDY68603 | Canola | cytosol | 15.63 | 21.9 |
| CDY56081 | Canola | nucleus | 15.34 | 21.76 |
| CDX92768 | Canola | nucleus | 19.76 | 21.68 |
| CDY20473 | Canola | nucleus, plastid | 21.24 | 21.56 |
| CDX74839 | Canola | cytosol, plastid | 20.35 | 21.3 |
| CDY28208 | Canola | cytosol | 14.45 | 21.12 |
| CDX92770 | Canola | nucleus | 19.76 | 20.68 |
| CDY42740 | Canola | nucleus | 19.17 | 20.19 |
| CDX80258 | Canola | plastid | 20.65 | 19.72 |
| CDY24951 | Canola | nucleus | 21.53 | 19.47 |
| CDX89343 | Canola | cytosol, mitochondrion | 20.06 | 19.32 |
| CDY07641 | Canola | nucleus | 21.24 | 19.25 |
| CDY53450 | Canola | cytosol | 17.99 | 18.94 |
| CDX94342 | Canola | mitochondrion, nucleus | 21.24 | 18.6 |
| CDX88709 | Canola | cytosol, plastid | 21.53 | 18.53 |
| CDY61251 | Canola | cytosol | 19.47 | 18.28 |
| CDX99105 | Canola | cytosol, plastid | 17.4 | 18.21 |
| CDY33046 | Canola | plastid | 18.29 | 18.13 |
| CDY48679 | Canola | cytosol, plastid | 17.4 | 17.66 |
| CDX78323 | Canola | cytosol | 14.45 | 17.01 |
| CDY69134 | Canola | cytosol | 14.45 | 16.84 |
| CDX90972 | Canola | cytosol | 16.22 | 16.42 |
| CDY58938 | Canola | nucleus | 20.94 | 16.1 |
| CDY03622 | Canola | nucleus | 20.94 | 15.92 |
| CDX85531 | Canola | cytosol | 15.93 | 15.74 |
| CDY34722 | Canola | cytosol | 17.4 | 15.13 |
| CDY34721 | Canola | cytosol | 17.4 | 15.13 |
| CDX69496 | Canola | cytosol | 12.68 | 14.93 |
| CDY26465 | Canola | cytosol | 14.45 | 14.45 |
| CDY01221 | Canola | cytosol | 9.14 | 14.22 |
| CDY51628 | Canola | peroxisome | 16.81 | 14.04 |
| CDY02194 | Canola | peroxisome | 16.22 | 13.82 |
| CDX69973 | Canola | cytosol | 13.86 | 13.06 |
| CDY21513 | Canola | cytosol | 13.57 | 12.92 |
| CDY11934 | Canola | nucleus | 23.6 | 12.27 |
| CDY23599 | Canola | golgi, mitochondrion | 21.83 | 12.15 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078HXE8 | UniProt:A0A078HXE8 | EnsemblPlants:CDY42507 | ProteinID:CDY42507 |
| ProteinID:CDY42507.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00074956001 | InterPro:IPR001841 |
| InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF1 |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0004EEAC60 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g03510DBnaC06g03510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXE8]
Coordinates
chrLK032527:-:60382..62350
Molecular Weight (calculated)
38612.1 Da
IEP (calculated)
5.640
GRAVY (calculated)
-0.294
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGNSTES SVAAAETDKM FFCHQCNQTI TITISSAADP FCPLCNLGFL EEYTDPIPIL IFPISDPPPS SRLPFIPVMD FTNLDHDPDA FDPVSFIHSH
101: LQQLQSSGIN VQMLFENHHH HHGDYFFGRG LEDLIQQLGE DDPNRYGPPP ASKSAVEALP TVKLTEEMLR SDKKQCAVCM EEFEDGVGVK EMPCRHVYHH
201: DCLLPWLRLH NTCPVCRHEL PTDDVDYENR RRGGGQTSGG GEEDRMRVRI LGVGLIWILG KTNWIELQPK SLFCLDWKKT CKEAICLHTP KNLQGEENCI
301: FAFSERFHLN FFIHIKMSIL FGSLGYVYYE IEFKKKYVL
101: LQQLQSSGIN VQMLFENHHH HHGDYFFGRG LEDLIQQLGE DDPNRYGPPP ASKSAVEALP TVKLTEEMLR SDKKQCAVCM EEFEDGVGVK EMPCRHVYHH
201: DCLLPWLRLH NTCPVCRHEL PTDDVDYENR RRGGGQTSGG GEEDRMRVRI LGVGLIWILG KTNWIELQPK SLFCLDWKKT CKEAICLHTP KNLQGEENCI
301: FAFSERFHLN FFIHIKMSIL FGSLGYVYYE IEFKKKYVL
001: MSSGVNSTGS AAAAPEVDKM FFCYQCNQTV TISISSSADP FCPICNQGFL EEYEDPNPNQ SLNFNPNSSD SFFPMADPFS TLLPLIFGSS AAAPSGMDFM
101: SLFGPSMQPQ ARSTQQNPQS DAFDPFTFLQ NHLQTLRSSG THFEFVIENH PSDPGNRMPG NFGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIDALP
201: TVKVTKDMLK SEMNQCAVCM DEFEDGSDVK QMPCKHVFHQ DCLLPWLELH NSCPVCRFEL PTDDPDYENR SQGSQGSGDG QGSVEGQQTP RFSIQLPWPF
301: RRQDGSGSGS GAPGTGGGNL ETRGEDLD
101: SLFGPSMQPQ ARSTQQNPQS DAFDPFTFLQ NHLQTLRSSG THFEFVIENH PSDPGNRMPG NFGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIDALP
201: TVKVTKDMLK SEMNQCAVCM DEFEDGSDVK QMPCKHVFHQ DCLLPWLELH NSCPVCRFEL PTDDPDYENR SQGSQGSGDG QGSVEGQQTP RFSIQLPWPF
301: RRQDGSGSGS GAPGTGGGNL ETRGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.