Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92770 | Canola | nucleus | 100.0 | 95.37 |
| CDY42740 | Canola | nucleus | 95.15 | 91.3 |
| AT4G26400.1 | Thale cress | nucleus | 75.4 | 65.45 |
| CDY46577 | Canola | nucleus | 54.37 | 57.73 |
| CDX89343 | Canola | cytosol, mitochondrion | 65.7 | 57.67 |
| CDY32791 | Canola | nucleus | 62.14 | 54.55 |
| CDX94342 | Canola | mitochondrion, nucleus | 68.28 | 54.52 |
| KRG97316 | Soybean | nucleus | 53.07 | 47.67 |
| GSMUA_Achr11P... | Banana | nucleus | 39.16 | 44.81 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 52.1 | 43.75 |
| CDY43991 | Canola | nucleus | 41.75 | 41.75 |
| PGSC0003DMT400046527 | Potato | nucleus | 47.9 | 41.11 |
| CDY26096 | Canola | nucleus | 38.84 | 40.82 |
| CDY08249 | Canola | cytosol | 44.01 | 40.6 |
| CDY56022 | Canola | nucleus | 40.45 | 39.94 |
| CDY10554 | Canola | cytosol | 39.16 | 39.67 |
| CDY56080 | Canola | cytosol | 33.33 | 36.27 |
| CDY50031 | Canola | cytosol | 33.33 | 35.52 |
| Os03t0812200-01 | Rice | nucleus | 42.39 | 35.5 |
| Zm00001d013005_P002 | Maize | nucleus | 40.78 | 33.96 |
| CDX82271 | Canola | cytosol | 22.98 | 33.33 |
| KXG37275 | Sorghum | nucleus | 41.1 | 33.16 |
| CDY36069 | Canola | cytosol | 22.98 | 32.72 |
| Zm00001d010635_P001 | Maize | nucleus | 33.01 | 32.69 |
| Os05t0488800-01 | Rice | nucleus | 33.33 | 31.89 |
| CDY11934 | Canola | nucleus | 66.99 | 31.75 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 33.98 | 31.63 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 33.98 | 31.63 |
| Zm00001d038528_P001 | Maize | cytosol | 33.98 | 31.53 |
| CDY28208 | Canola | cytosol | 23.62 | 31.47 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 40.45 | 31.41 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 40.78 | 31.34 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 40.45 | 30.94 |
| CDX75998 | Canola | nucleus | 19.09 | 30.73 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 40.13 | 30.69 |
| CDY72364 | Canola | cytosol | 21.68 | 30.18 |
| CDY56081 | Canola | nucleus | 22.98 | 29.71 |
| Solyc01g050040.2.1 | Tomato | nucleus | 26.21 | 27.74 |
| KXG22238 | Sorghum | plastid | 34.63 | 27.51 |
| HORVU1Hr1G068950.2 | Barley | golgi | 34.3 | 27.46 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 28.16 | 26.93 |
| CDY24592 | Canola | nucleus | 27.83 | 26.79 |
| CDY23878 | Canola | mitochondrion, nucleus | 25.89 | 26.23 |
| CDY22483 | Canola | mitochondrion | 25.57 | 26.07 |
| CDX79968 | Canola | mitochondrion, nucleus | 24.6 | 25.59 |
| CDY33437 | Canola | cytosol | 26.54 | 25.31 |
| CDY22790 | Canola | nucleus | 21.68 | 24.81 |
| CDY32333 | Canola | cytosol | 18.77 | 24.68 |
| CDY27204 | Canola | mitochondrion, nucleus | 24.92 | 24.68 |
| CDY35437 | Canola | mitochondrion, nucleus | 25.24 | 24.61 |
| CDY68603 | Canola | cytosol | 19.09 | 24.38 |
| CDX72127 | Canola | mitochondrion | 24.92 | 24.37 |
| CDX94665 | Canola | nucleus | 17.48 | 22.98 |
| CDX74533 | Canola | cytosol | 21.04 | 22.26 |
| CDY53450 | Canola | cytosol | 22.01 | 21.12 |
| CDY23599 | Canola | golgi, mitochondrion | 41.42 | 21.02 |
| CDX94901 | Canola | cytosol | 21.04 | 20.7 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 19.09 | 20.34 |
| CDX80258 | Canola | plastid | 23.3 | 20.28 |
| CDY01669 | Canola | plastid | 21.04 | 20.12 |
| CDY42507 | Canola | cytosol | 21.68 | 19.76 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 19.09 | 19.73 |
| CDX88709 | Canola | cytosol, plastid | 24.6 | 19.29 |
| CDY20473 | Canola | nucleus, plastid | 20.39 | 18.86 |
| CDY33046 | Canola | plastid | 20.71 | 18.71 |
| CDY61251 | Canola | cytosol | 21.68 | 18.56 |
| CDX74839 | Canola | cytosol, plastid | 19.09 | 18.21 |
| CDY48679 | Canola | cytosol, plastid | 19.42 | 17.96 |
| CDY07641 | Canola | nucleus | 21.68 | 17.91 |
| CDX99105 | Canola | cytosol, plastid | 18.77 | 17.9 |
| CDY24951 | Canola | nucleus | 21.68 | 17.87 |
| CDX78323 | Canola | cytosol | 15.21 | 16.32 |
| CDY69134 | Canola | cytosol | 14.89 | 15.81 |
| CDY21513 | Canola | cytosol | 17.15 | 14.89 |
| CDY03622 | Canola | nucleus | 21.36 | 14.8 |
| CDY58938 | Canola | nucleus | 21.04 | 14.74 |
| CDX69973 | Canola | cytosol | 16.83 | 14.44 |
| CDY01221 | Canola | cytosol | 9.71 | 13.76 |
| CDX90972 | Canola | cytosol | 14.56 | 13.43 |
| CDX69496 | Canola | cytosol | 11.97 | 12.85 |
| CDY34721 | Canola | cytosol | 16.18 | 12.82 |
| CDY34722 | Canola | cytosol | 16.18 | 12.82 |
| CDX85531 | Canola | cytosol | 13.92 | 12.54 |
| CDY26465 | Canola | cytosol | 13.27 | 12.09 |
| CDY02194 | Canola | peroxisome | 14.24 | 11.06 |
| CDY51628 | Canola | peroxisome | 14.24 | 10.84 |
Protein Annotations
| EnsemblPlants:CDX92768 | EnsemblPlantsGene:GSBRNA2T00154590001 | Gene3D:3.30.40.10 | GO:A0A078DZN0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDX92768 | ProteinID:CDX92768.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EEBDF0 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g40260D
Coordinates
chrLK031873:-:739635..740985
Molecular Weight (calculated)
35236.4 Da
IEP (calculated)
6.319
GRAVY (calculated)
-0.668
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARYWCHMC SQVVNPIIEA EIKCPYCQSG FLEEMSDQET GFGTDRALTL WGPVLVGMMS NPRRRRRFRR TEFGVDNDEV NVAVDNHHHR RHHDREHEGE
101: IDLDMEVDSI MRRRRRSSAA ILQLLQGIRE GLNSDHESPD GNSFGDYLAR PELDHLLRSL ADNDLIRRQG TLPARKEAVD NLPTVKICEP LQCSVCLDEF
201: DKGCEAKEMP CKHKFHIRCI VPWLELHSSC PVCRYELPHD EELKTDLVRP RTRSVGVNLS NENVEENARN ISGSERRFSL RWPFSGLFSS SSSSSGSTSG
301: SSQLNENAS
101: IDLDMEVDSI MRRRRRSSAA ILQLLQGIRE GLNSDHESPD GNSFGDYLAR PELDHLLRSL ADNDLIRRQG TLPARKEAVD NLPTVKICEP LQCSVCLDEF
201: DKGCEAKEMP CKHKFHIRCI VPWLELHSSC PVCRYELPHD EELKTDLVRP RTRSVGVNLS NENVEENARN ISGSERRFSL RWPFSGLFSS SSSSSGSTSG
301: SSQLNENAS
001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS
Arabidopsis Description
AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.