Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g050040.2.1 | Tomato | nucleus | 47.22 | 58.22 |
| CDY46577 | Canola | nucleus | 46.11 | 57.04 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 58.06 | 56.79 |
| KRG97316 | Soybean | nucleus | 54.17 | 56.69 |
| GSMUA_Achr11P... | Banana | nucleus | 39.17 | 52.22 |
| Bra002823.1-P | Field mustard | nucleus | 49.17 | 50.28 |
| CDY32791 | Canola | nucleus | 49.17 | 50.28 |
| AT5G56340.1 | Thale cress | nucleus | 53.06 | 48.23 |
| CDX92768 | Canola | nucleus | 41.11 | 47.9 |
| AT4G26400.1 | Thale cress | nucleus | 46.11 | 46.63 |
| CDX92770 | Canola | nucleus | 41.67 | 46.3 |
| CDY42740 | Canola | nucleus | 40.56 | 45.34 |
| Bra019109.1-P | Field mustard | nucleus | 40.28 | 45.03 |
| Bra026444.1-P | Field mustard | nucleus | 45.56 | 44.2 |
| CDX89343 | Canola | cytosol, mitochondrion | 43.06 | 44.03 |
| Os03t0812200-01 | Rice | nucleus | 44.72 | 43.63 |
| CDX94342 | Canola | mitochondrion, nucleus | 44.72 | 41.6 |
| Zm00001d010635_P001 | Maize | nucleus | 34.72 | 40.06 |
| KXG37275 | Sorghum | nucleus | 42.22 | 39.69 |
| Zm00001d013005_P002 | Maize | nucleus | 40.28 | 39.08 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 43.06 | 38.56 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 42.5 | 38.44 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 35.0 | 37.95 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 35.0 | 37.95 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 42.5 | 37.87 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 42.5 | 37.87 |
| Os05t0488800-01 | Rice | nucleus | 33.89 | 37.77 |
| Zm00001d038528_P001 | Maize | cytosol | 33.89 | 36.64 |
| KXG22238 | Sorghum | plastid | 36.39 | 33.68 |
| HORVU1Hr1G068950.2 | Barley | golgi | 35.56 | 33.16 |
| Bra028935.1-P | Field mustard | nucleus | 51.39 | 32.57 |
| PGSC0003DMT400082489 | Potato | nucleus | 28.06 | 31.37 |
| CDY11934 | Canola | nucleus | 50.56 | 27.91 |
| PGSC0003DMT400058464 | Potato | nucleus | 24.17 | 27.36 |
| PGSC0003DMT400079301 | Potato | nucleus | 21.11 | 25.33 |
| PGSC0003DMT400026380 | Potato | nucleus | 26.67 | 24.81 |
| PGSC0003DMT400016233 | Potato | nucleus | 25.83 | 23.6 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 24.72 | 23.06 |
| PGSC0003DMT400002370 | Potato | cytosol | 20.28 | 22.6 |
| PGSC0003DMT400061055 | Potato | extracellular | 18.61 | 22.48 |
| PGSC0003DMT400081469 | Potato | nucleus | 23.06 | 21.96 |
| PGSC0003DMT400069320 | Potato | nucleus | 22.5 | 20.15 |
| PGSC0003DMT400068309 | Potato | cytosol | 15.0 | 13.57 |
| PGSC0003DMT400063293 | Potato | nucleus | 15.56 | 12.96 |
| PGSC0003DMT400003515 | Potato | nucleus | 12.78 | 12.4 |
| PGSC0003DMT400071362 | Potato | nucleus | 15.83 | 12.05 |
Protein Annotations
| EntrezGene:102578980 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M1BJ75 |
| PFAM:PF13639 | PFAM:PF14369 | EnsemblPlantsGene:PGSC0003DMG400018060 | PGSC:PGSC0003DMG400018060 | EnsemblPlants:PGSC0003DMT400046527 | PFscan:PS50089 |
| PANTHER:PTHR44576 | PANTHER:PTHR44576:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296D97A | RefSeq:XP_006348226.1 |
| RefSeq:XP_006348227.1 | RefSeq:XP_006348228.1 | RefSeq:XP_015164595.1 | RefSeq:XP_015164596.1 | RefSeq:XP_015164597.1 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018060]
Coordinates
chr1:-:39324700..39327610
Molecular Weight (calculated)
40105.3 Da
IEP (calculated)
4.588
GRAVY (calculated)
-0.803
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRGASRYW CHHCSRRVNP MMEVELKCPI CQLGFIEEMG SDTTETPLDS DSDSDRALSL WAPILLGMMT NPRRRSRLRH LEFEDDDDDD HTREADTQLD
101: PDLASIINRR RRNSATILQL LQGIRAGMLA ESENPNPDNE NRETGRESRD RERVILINPF NQTIIVQGSD NNSRNQPIGS LGDYFIGPGL DVLLQHLAEN
201: DPNRYGTPPA QKEVVEALPV VTIDETLQCS VCLEDFEIGT EAKEMPCKHR FHGDCILPWL ELHSTCPVCR HQLPSDESKV ESAGTNDGSG SNTNAQSSNG
301: NGRRYEDEDT RNENGRRFPV SLPWPLSGLF SSPNSGSNGN SSSMTSSASN ANSNAHMHED
101: PDLASIINRR RRNSATILQL LQGIRAGMLA ESENPNPDNE NRETGRESRD RERVILINPF NQTIIVQGSD NNSRNQPIGS LGDYFIGPGL DVLLQHLAEN
201: DPNRYGTPPA QKEVVEALPV VTIDETLQCS VCLEDFEIGT EAKEMPCKHR FHGDCILPWL ELHSTCPVCR HQLPSDESKV ESAGTNDGSG SNTNAQSSNG
301: NGRRYEDEDT RNENGRRFPV SLPWPLSGLF SSPNSGSNGN SSSMTSSASN ANSNAHMHED
001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR
Arabidopsis Description
ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.