Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g012950.1.1 | Tomato | cytosol | 91.02 | 88.29 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 47.68 | 46.25 |
| CDX74533 | Canola | cytosol | 40.87 | 45.21 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 43.65 | 43.38 |
| CDY01669 | Canola | plastid | 41.49 | 41.49 |
| KRH64713 | Soybean | nucleus | 45.2 | 41.48 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 31.27 | 41.06 |
| AT1G60360.1 | Thale cress | nucleus | 41.49 | 40.98 |
| TraesCS6D01G309800.1 | Wheat | mitochondrion | 32.82 | 33.33 |
| Zm00001d052154_P001 | Maize | mitochondrion | 32.51 | 33.02 |
| Os02t0767600-00 | Rice | mitochondrion | 33.13 | 32.62 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 32.51 | 32.21 |
| Zm00001d018190_P001 | Maize | mitochondrion | 32.82 | 31.83 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 32.51 | 31.53 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 32.82 | 31.18 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 32.51 | 31.16 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 30.34 | 30.91 |
| EER89401 | Sorghum | mitochondrion, nucleus | 31.89 | 30.84 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 30.34 | 30.43 |
| KXG31176 | Sorghum | plastid | 33.44 | 30.34 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 30.03 | 30.31 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 29.72 | 30.09 |
| PGSC0003DMT400058464 | Potato | nucleus | 28.17 | 28.62 |
| PGSC0003DMT400079301 | Potato | nucleus | 25.39 | 27.33 |
| PGSC0003DMT400061055 | Potato | extracellular | 22.6 | 24.5 |
| PGSC0003DMT400026380 | Potato | nucleus | 26.63 | 22.22 |
| PGSC0003DMT400082489 | Potato | nucleus | 21.67 | 21.74 |
| PGSC0003DMT400046527 | Potato | nucleus | 22.6 | 20.28 |
| PGSC0003DMT400016233 | Potato | nucleus | 24.46 | 20.05 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 23.53 | 19.69 |
| PGSC0003DMT400069320 | Potato | nucleus | 21.98 | 17.66 |
| PGSC0003DMT400081469 | Potato | nucleus | 19.81 | 16.93 |
| PGSC0003DMT400071362 | Potato | nucleus | 18.27 | 12.47 |
| PGSC0003DMT400063293 | Potato | nucleus | 14.86 | 11.11 |
| PGSC0003DMT400003515 | Potato | nucleus | 11.15 | 9.7 |
| PGSC0003DMT400068309 | Potato | cytosol | 10.84 | 8.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400002370 | EnsemblPlantsGene:PGSC0003DMG400000908 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF4 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400000908 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002955B90 | UniProt:M0ZK10 | MapMan:35.1 |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000908]
Coordinates
chr11:+:10756779..10757750
Molecular Weight (calculated)
37318.2 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.711
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTENPNNG NRNFQRYWCY QCHLIVRVSP ENPSEIICPR CFGHFLYEID EANPGQILDF TAFDPSPEAR ILEALTLMLD PNLFNTSQGN VIPIFRRSDG
101: TETLVPPPTR GRHERIRDSW LRPRRRYSFL NNDTDEFTPE SGILARPRSW IVIRPSGGPD RRERRRLGPH EVNNSRDYFT GPGLENLIEE LTQNDRPGAA
201: PAPEPIINSI PTVVIVAAHL KDDSECPVCK EKFKIGGEAR ELPCKHIYHS DCIVPWLRLH NSCPVCRNPL PVSSEAQMDS SDDCLEEEER MNRQRRCFRL
301: RQMAASLWPF RSRYRPMRNH GEI
101: TETLVPPPTR GRHERIRDSW LRPRRRYSFL NNDTDEFTPE SGILARPRSW IVIRPSGGPD RRERRRLGPH EVNNSRDYFT GPGLENLIEE LTQNDRPGAA
201: PAPEPIINSI PTVVIVAAHL KDDSECPVCK EKFKIGGEAR ELPCKHIYHS DCIVPWLRLH NSCPVCRNPL PVSSEAQMDS SDDCLEEEER MNRQRRCFRL
301: RQMAASLWPF RSRYRPMRNH GEI
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.